miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 40762 1.1 0.000238
Target:  5'- gAGCGCCGCCGUGAACCACCACCAGGCc -3'
miRNA:   3'- -UCGCGGCGGCACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 7822 0.68 0.320852
Target:  5'- cGCGCCccGCagCGUGGAUCACCgucgcggccgucaGCCAGGa -3'
miRNA:   3'- uCGCGG--CG--GCACUUGGUGG-------------UGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 34026 0.68 0.337288
Target:  5'- cGGgGCCaCCGUGcgcuucuuGACCGgCACCGGGa -3'
miRNA:   3'- -UCgCGGcGGCAC--------UUGGUgGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 37091 0.66 0.432099
Target:  5'- uGCGUCGagauccagcCCG-GAGCCACCuuguagaACuCAGGCa -3'
miRNA:   3'- uCGCGGC---------GGCaCUUGGUGG-------UG-GUCCG- -5'
7356 5' -60.2 NC_001900.1 + 40926 0.71 0.19962
Target:  5'- cGCGCCguagacGCCGUuGAUgAUCGCCAGGUa -3'
miRNA:   3'- uCGCGG------CGGCAcUUGgUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 40566 0.71 0.204889
Target:  5'- uGGCGCgUGCCGacUGAcCUACCgagagggaacGCCAGGCa -3'
miRNA:   3'- -UCGCG-GCGGC--ACUuGGUGG----------UGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 5296 0.7 0.221425
Target:  5'- uGCuGCCgGCCGUGcguGACgGCCucauCCAGGCc -3'
miRNA:   3'- uCG-CGG-CGGCAC---UUGgUGGu---GGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 20223 0.7 0.221425
Target:  5'- cGGCGUagccaCGCUGcagcucucgcUGAGCCACUACCuGGCc -3'
miRNA:   3'- -UCGCG-----GCGGC----------ACUUGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 10631 0.7 0.239084
Target:  5'- cAGCgGCCcagGCCGUG-AUCACUGCgGGGCu -3'
miRNA:   3'- -UCG-CGG---CGGCACuUGGUGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 21266 0.68 0.299153
Target:  5'- cGGCGCgGUCgGUGGcgcgaucgaccuGCCcCCGCUGGGCg -3'
miRNA:   3'- -UCGCGgCGG-CACU------------UGGuGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 43149 0.69 0.264442
Target:  5'- gGGUGCCGCC-UGAGCUgauguCCcCCAGGa -3'
miRNA:   3'- -UCGCGGCGGcACUUGGu----GGuGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 41103 0.7 0.227184
Target:  5'- -uCGCgGCCGUGGACCuuggucucgAUCACCcgAGGCu -3'
miRNA:   3'- ucGCGgCGGCACUUGG---------UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 33063 0.73 0.145112
Target:  5'- -cCGCCGCCGcu-ACCGCCGCCAccggaguucGGCu -3'
miRNA:   3'- ucGCGGCGGCacuUGGUGGUGGU---------CCG- -5'
7356 5' -60.2 NC_001900.1 + 34773 0.69 0.271114
Target:  5'- cAGCGCacCGCCGUccucGAACCugUACUgcucgccuucgcGGGCa -3'
miRNA:   3'- -UCGCG--GCGGCA----CUUGGugGUGG------------UCCG- -5'
7356 5' -60.2 NC_001900.1 + 18984 0.72 0.161578
Target:  5'- cGCGCUgucgGUCGUGGGCCGagcuugacauCCACCAGGa -3'
miRNA:   3'- uCGCGG----CGGCACUUGGU----------GGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 11040 0.7 0.227184
Target:  5'- aAGgGCUgGgCGaGggUCGCCACCGGGCg -3'
miRNA:   3'- -UCgCGG-CgGCaCuuGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 28021 0.69 0.284861
Target:  5'- cGgGCCGguguaaCCGggugcgGAGCCGCCACCgucacAGGCc -3'
miRNA:   3'- uCgCGGC------GGCa-----CUUGGUGGUGG-----UCCG- -5'
7356 5' -60.2 NC_001900.1 + 37431 0.68 0.321621
Target:  5'- gGGUGUCGCCGaUGAACCcgACCACa--GCc -3'
miRNA:   3'- -UCGCGGCGGC-ACUUGG--UGGUGgucCG- -5'
7356 5' -60.2 NC_001900.1 + 20328 0.72 0.179233
Target:  5'- aGGCGCUcgauggaGCgGgaugaUGGACCACUACCGGGUg -3'
miRNA:   3'- -UCGCGG-------CGgC-----ACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 68 0.71 0.21579
Target:  5'- gAGCGCCucgcccaggcGCUGUGAGCCACCA--GGaGCc -3'
miRNA:   3'- -UCGCGG----------CGGCACUUGGUGGUggUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.