miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 25466 0.66 0.396398
Target:  5'- cGCaCCgGCC-UGAGCCGCCAgCguGGCu -3'
miRNA:   3'- uCGcGG-CGGcACUUGGUGGU-GguCCG- -5'
7356 5' -60.2 NC_001900.1 + 37431 0.68 0.321621
Target:  5'- gGGUGUCGCCGaUGAACCcgACCACa--GCc -3'
miRNA:   3'- -UCGCGGCGGC-ACUUGG--UGGUGgucCG- -5'
7356 5' -60.2 NC_001900.1 + 20328 0.72 0.179233
Target:  5'- aGGCGCUcgauggaGCgGgaugaUGGACCACUACCGGGUg -3'
miRNA:   3'- -UCGCGG-------CGgC-----ACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 2533 0.67 0.359307
Target:  5'- aAGCGauCUGCCGUGucuGCCacggcaagaagucaGCCGCUgaGGGCg -3'
miRNA:   3'- -UCGC--GGCGGCACu--UGG--------------UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 39447 0.66 0.414469
Target:  5'- uGGCGCa-CCGUGGGCCGggaUACUuGGCg -3'
miRNA:   3'- -UCGCGgcGGCACUUGGUg--GUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 3398 0.67 0.387554
Target:  5'- cGCGCUGCaccagGUGua-CAUCACCGGGg -3'
miRNA:   3'- uCGCGGCGg----CACuugGUGGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 18984 0.72 0.161578
Target:  5'- cGCGCUgucgGUCGUGGGCCGagcuugacauCCACCAGGa -3'
miRNA:   3'- uCGCGG----CGGCACUUGGU----------GGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 33063 0.73 0.145112
Target:  5'- -cCGCCGCCGcu-ACCGCCGCCAccggaguucGGCu -3'
miRNA:   3'- ucGCGGCGGCacuUGGUGGUGGU---------CCG- -5'
7356 5' -60.2 NC_001900.1 + 40566 0.71 0.204889
Target:  5'- uGGCGCgUGCCGacUGAcCUACCgagagggaacGCCAGGCa -3'
miRNA:   3'- -UCGCG-GCGGC--ACUuGGUGG----------UGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 34026 0.68 0.337288
Target:  5'- cGGgGCCaCCGUGcgcuucuuGACCGgCACCGGGa -3'
miRNA:   3'- -UCgCGGcGGCAC--------UUGGUgGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 14143 0.66 0.423693
Target:  5'- gAGCGCgucuaCGaCGUGucCCGCguCCGGGCg -3'
miRNA:   3'- -UCGCG-----GCgGCACuuGGUGguGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 24102 0.7 0.244607
Target:  5'- uGCGCCGCC-------GCCACCAGGUg -3'
miRNA:   3'- uCGCGGCGGcacuuggUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 44068 0.67 0.378842
Target:  5'- -cCGCCGCCGUGcuggagcccgacGAgCAUgACCGGGg -3'
miRNA:   3'- ucGCGGCGGCAC------------UUgGUGgUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 28123 0.67 0.387554
Target:  5'- -aCGaCCGCCcggacgaacccgGUGAGCCaggaGCCGCCgaAGGCg -3'
miRNA:   3'- ucGC-GGCGG------------CACUUGG----UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 20900 0.66 0.396398
Target:  5'- aGGCGCUGCUGgaGAACCAaggGCUcaAGGCc -3'
miRNA:   3'- -UCGCGGCGGCa-CUUGGUgg-UGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 47829 0.69 0.291939
Target:  5'- cGCuGCCGCCGccaccGAguaCACCACCGGuGCc -3'
miRNA:   3'- uCG-CGGCGGCa----CUug-GUGGUGGUC-CG- -5'
7356 5' -60.2 NC_001900.1 + 47439 0.69 0.284861
Target:  5'- cGCGCUGaCCGgggGugUCGCCACC-GGCc -3'
miRNA:   3'- uCGCGGC-GGCa--CuuGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 28986 0.69 0.284861
Target:  5'- cAGCGCCGCaguUGGAUCuuCCGCCAGa- -3'
miRNA:   3'- -UCGCGGCGgc-ACUUGGu-GGUGGUCcg -5'
7356 5' -60.2 NC_001900.1 + 19483 0.69 0.264442
Target:  5'- cGGCgGCUGCCgGUGGACCGCUcucggacguACUcGGCg -3'
miRNA:   3'- -UCG-CGGCGG-CACUUGGUGG---------UGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 25730 0.7 0.245227
Target:  5'- uAGcCGCCGCCGguauaGAACUcgGCCcaGCCGGGg -3'
miRNA:   3'- -UC-GCGGCGGCa----CUUGG--UGG--UGGUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.