miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7356 5' -60.2 NC_001900.1 + 18984 0.72 0.161578
Target:  5'- cGCGCUgucgGUCGUGGGCCGagcuugacauCCACCAGGa -3'
miRNA:   3'- uCGCGG----CGGCACUUGGU----------GGUGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 19240 0.68 0.313994
Target:  5'- cGCGCUGCCuucggGGACCACauCACCAaGGa -3'
miRNA:   3'- uCGCGGCGGca---CUUGGUG--GUGGU-CCg -5'
7356 5' -60.2 NC_001900.1 + 19483 0.69 0.264442
Target:  5'- cGGCgGCUGCCgGUGGACCGCUcucggacguACUcGGCg -3'
miRNA:   3'- -UCG-CGGCGG-CACUUGGUGG---------UGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 20223 0.7 0.221425
Target:  5'- cGGCGUagccaCGCUGcagcucucgcUGAGCCACUACCuGGCc -3'
miRNA:   3'- -UCGCG-----GCGGC----------ACUUGGUGGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 20328 0.72 0.179233
Target:  5'- aGGCGCUcgauggaGCgGgaugaUGGACCACUACCGGGUg -3'
miRNA:   3'- -UCGCGG-------CGgC-----ACUUGGUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 20900 0.66 0.396398
Target:  5'- aGGCGCUGCUGgaGAACCAaggGCUcaAGGCc -3'
miRNA:   3'- -UCGCGGCGGCa-CUUGGUgg-UGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 21266 0.68 0.299153
Target:  5'- cGGCGCgGUCgGUGGcgcgaucgaccuGCCcCCGCUGGGCg -3'
miRNA:   3'- -UCGCGgCGG-CACU------------UGGuGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 24102 0.7 0.244607
Target:  5'- uGCGCCGCC-------GCCACCAGGUg -3'
miRNA:   3'- uCGCGGCGGcacuuggUGGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 24152 0.66 0.423693
Target:  5'- uAGCGCCGCCGUcguaGGuCCGgucucgguaCACCAugucGGCa -3'
miRNA:   3'- -UCGCGGCGGCA----CUuGGUg--------GUGGU----CCG- -5'
7356 5' -60.2 NC_001900.1 + 24414 0.7 0.238477
Target:  5'- gAGCGUgGCCGUcacccagGAACCGCCgaaGCCGccuuGGCc -3'
miRNA:   3'- -UCGCGgCGGCA-------CUUGGUGG---UGGU----CCG- -5'
7356 5' -60.2 NC_001900.1 + 24552 0.7 0.221425
Target:  5'- cGCGCCgaccGCCGUGAccggagUCAgCACCGGGUc -3'
miRNA:   3'- uCGCGG----CGGCACUu-----GGUgGUGGUCCG- -5'
7356 5' -60.2 NC_001900.1 + 25251 0.68 0.329386
Target:  5'- cAGCGCCgauaGCCGaccgGAGCCcgucgucggACCACaGGGCc -3'
miRNA:   3'- -UCGCGG----CGGCa---CUUGG---------UGGUGgUCCG- -5'
7356 5' -60.2 NC_001900.1 + 25466 0.66 0.396398
Target:  5'- cGCaCCgGCC-UGAGCCGCCAgCguGGCu -3'
miRNA:   3'- uCGcGG-CGGcACUUGGUGGU-GguCCG- -5'
7356 5' -60.2 NC_001900.1 + 25512 0.67 0.370261
Target:  5'- cGCGCaGCCacaaccggauguGUGAGCCGCC-CCggaagAGGCc -3'
miRNA:   3'- uCGCGgCGG------------CACUUGGUGGuGG-----UCCG- -5'
7356 5' -60.2 NC_001900.1 + 25730 0.7 0.245227
Target:  5'- uAGcCGCCGCCGguauaGAACUcgGCCcaGCCGGGg -3'
miRNA:   3'- -UC-GCGGCGGCa----CUUGG--UGG--UGGUCCg -5'
7356 5' -60.2 NC_001900.1 + 28021 0.69 0.284861
Target:  5'- cGgGCCGguguaaCCGggugcgGAGCCGCCACCgucacAGGCc -3'
miRNA:   3'- uCgCGGC------GGCa-----CUUGGUGGUGG-----UCCG- -5'
7356 5' -60.2 NC_001900.1 + 28123 0.67 0.387554
Target:  5'- -aCGaCCGCCcggacgaacccgGUGAGCCaggaGCCGCCgaAGGCg -3'
miRNA:   3'- ucGC-GGCGG------------CACUUGG----UGGUGG--UCCG- -5'
7356 5' -60.2 NC_001900.1 + 28986 0.69 0.284861
Target:  5'- cAGCGCCGCaguUGGAUCuuCCGCCAGa- -3'
miRNA:   3'- -UCGCGGCGgc-ACUUGGu-GGUGGUCcg -5'
7356 5' -60.2 NC_001900.1 + 29565 0.67 0.345327
Target:  5'- cAGCGCCGaguaCGUccgaGAGCgGuCCACC-GGCa -3'
miRNA:   3'- -UCGCGGCg---GCA----CUUGgU-GGUGGuCCG- -5'
7356 5' -60.2 NC_001900.1 + 30997 0.67 0.370261
Target:  5'- cGCGCCaGCC-UGcACCACggccgcaGCCAGGUu -3'
miRNA:   3'- uCGCGG-CGGcACuUGGUGg------UGGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.