miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7359 5' -53.1 NC_001900.1 + 12357 0.66 0.817104
Target:  5'- -aCCUGcacAAGAacGCACGGUCgCGGCGg -3'
miRNA:   3'- uaGGGCaacUUCU--UGUGCUAG-GCCGC- -5'
7359 5' -53.1 NC_001900.1 + 38159 0.66 0.817104
Target:  5'- cGUCCag--GAAcuGCugGAUCCGGUGg -3'
miRNA:   3'- -UAGGgcaaCUUcuUGugCUAGGCCGC- -5'
7359 5' -53.1 NC_001900.1 + 15091 0.66 0.807495
Target:  5'- -aCCCGUcGAccuGGACugGAgccaCCGGCu -3'
miRNA:   3'- uaGGGCAaCUu--CUUGugCUa---GGCCGc -5'
7359 5' -53.1 NC_001900.1 + 15254 0.66 0.777557
Target:  5'- gAUCCCGacGAAGGACACcuuGGUCgaGGCc -3'
miRNA:   3'- -UAGGGCaaCUUCUUGUG---CUAGg-CCGc -5'
7359 5' -53.1 NC_001900.1 + 30329 0.67 0.767247
Target:  5'- gAUCCCGUacucguUGAGGAGCACGGccUCCc--- -3'
miRNA:   3'- -UAGGGCA------ACUUCUUGUGCU--AGGccgc -5'
7359 5' -53.1 NC_001900.1 + 29534 0.68 0.702761
Target:  5'- cAUCCCGagacguGGACugGAUCUGGUa -3'
miRNA:   3'- -UAGGGCaacuu-CUUGugCUAGGCCGc -5'
7359 5' -53.1 NC_001900.1 + 8903 0.69 0.617655
Target:  5'- uUCgCGUucgacugugagcgccUGGAGGACGCGGUCCucgaaGGCGa -3'
miRNA:   3'- uAGgGCA---------------ACUUCUUGUGCUAGG-----CCGC- -5'
7359 5' -53.1 NC_001900.1 + 41896 0.7 0.572862
Target:  5'- aGUCCCGgccaccgaUGAAGcgcuggccuucauCACGAUCCGGCc -3'
miRNA:   3'- -UAGGGCa-------ACUUCuu-----------GUGCUAGGCCGc -5'
7359 5' -53.1 NC_001900.1 + 10219 0.72 0.471639
Target:  5'- gGUCgaGcgGAAGAACGCGAUCuuCGGCGg -3'
miRNA:   3'- -UAGggCaaCUUCUUGUGCUAG--GCCGC- -5'
7359 5' -53.1 NC_001900.1 + 9173 0.73 0.393118
Target:  5'- -cCCCGgacagGAGGAGauCGCuGAUCCGGCGa -3'
miRNA:   3'- uaGGGCaa---CUUCUU--GUG-CUAGGCCGC- -5'
7359 5' -53.1 NC_001900.1 + 21913 0.74 0.33176
Target:  5'- cUCCCGUUGAuugcaggcgucGGGGCgaucACGcAUCCGGCGu -3'
miRNA:   3'- uAGGGCAACU-----------UCUUG----UGC-UAGGCCGC- -5'
7359 5' -53.1 NC_001900.1 + 41666 1.06 0.002214
Target:  5'- gAUCCCGUUGAAGAACACGAUCCGGCGc -3'
miRNA:   3'- -UAGGGCAACUUCUUGUGCUAGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.