Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7366 | 3' | -58.8 | NC_001900.1 | + | 39396 | 0.67 | 0.467519 |
Target: 5'- gGGUCUCCcaGCuCGUUGAGCU-GCGAgCa -3' miRNA: 3'- gCCAGAGG--UG-GCAGCUCGGgUGCUgG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 21069 | 0.68 | 0.448299 |
Target: 5'- aGGgCUCCGCaCGUCGuguucgaagagGGgCCACuGACCg -3' miRNA: 3'- gCCaGAGGUG-GCAGC-----------UCgGGUG-CUGG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 25459 | 0.68 | 0.445454 |
Target: 5'- uGGUCgUCgCACCGgccUGAGCcgccagcguggcucCCACGGCCc -3' miRNA: 3'- gCCAG-AG-GUGGCa--GCUCG--------------GGUGCUGG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 6404 | 0.68 | 0.411222 |
Target: 5'- aGGUCaCCAggggCGUCGAGCaggugcUCGCGGCCa -3' miRNA: 3'- gCCAGaGGUg---GCAGCUCG------GGUGCUGG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 32023 | 0.69 | 0.376106 |
Target: 5'- uCGG-CU-CGCCGUUGAGCaCCuugguaGCGGCCg -3' miRNA: 3'- -GCCaGAgGUGGCAGCUCG-GG------UGCUGG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 41604 | 0.69 | 0.367649 |
Target: 5'- uGGgCUCCGgUGUCGGGCUCGauggagcacCGACCc -3' miRNA: 3'- gCCaGAGGUgGCAGCUCGGGU---------GCUGG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 40444 | 0.69 | 0.351131 |
Target: 5'- cCGGUgC-CUACCGUUGAGaCCC-CGACg -3' miRNA: 3'- -GCCA-GaGGUGGCAGCUC-GGGuGCUGg -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 44857 | 1.11 | 0.000359 |
Target: 5'- gCGGUCUCCACCGUCGAGCCCACGACCu -3' miRNA: 3'- -GCCAGAGGUGGCAGCUCGGGUGCUGG- -5' |
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7366 | 3' | -58.8 | NC_001900.1 | + | 33816 | 0.66 | 0.548183 |
Target: 5'- aGGUgUCCuuCGUCGGGaUCuCGACCa -3' miRNA: 3'- gCCAgAGGugGCAGCUCgGGuGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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