miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7367 3' -57 NC_001900.1 + 45000 1.11 0.000395
Target:  5'- cGUGCGAGCACGUCAACCUGGUCGGCCu -3'
miRNA:   3'- -CACGCUCGUGCAGUUGGACCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 6300 0.78 0.116617
Target:  5'- -cGCuGGCGCucUCAACCUGGUCGGCg -3'
miRNA:   3'- caCGcUCGUGc-AGUUGGACCAGCCGg -5'
7367 3' -57 NC_001900.1 + 40312 0.74 0.206886
Target:  5'- -aGUGAGC-CGcugCGGCCgUGGUUGGCCg -3'
miRNA:   3'- caCGCUCGuGCa--GUUGG-ACCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 31437 0.73 0.229811
Target:  5'- -cGCGgcAGCGCGaUCAcuACCUGGauccgaUCGGCCa -3'
miRNA:   3'- caCGC--UCGUGC-AGU--UGGACC------AGCCGG- -5'
7367 3' -57 NC_001900.1 + 48808 0.71 0.303973
Target:  5'- uGUGUGAGCugGUCacGugCUGGUgUGGUg -3'
miRNA:   3'- -CACGCUCGugCAG--UugGACCA-GCCGg -5'
7367 3' -57 NC_001900.1 + 23565 0.71 0.319285
Target:  5'- uUGUGGcuGCGCGUCAacgacaacgcGCCUacGGUCGGCa -3'
miRNA:   3'- cACGCU--CGUGCAGU----------UGGA--CCAGCCGg -5'
7367 3' -57 NC_001900.1 + 48528 0.71 0.335169
Target:  5'- -cGCG-GCAUGUUccaGGCCgcgaGGUUGGCCg -3'
miRNA:   3'- caCGCuCGUGCAG---UUGGa---CCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 43827 0.7 0.350787
Target:  5'- -cGCGAGCgaggauuucggcaGCGUCGACacuCUGcGUCgGGCCg -3'
miRNA:   3'- caCGCUCG-------------UGCAGUUG---GAC-CAG-CCGG- -5'
7367 3' -57 NC_001900.1 + 20957 0.7 0.360062
Target:  5'- -gGCG-GU-CGUCAACCUGGcuggagaCGGCCa -3'
miRNA:   3'- caCGCuCGuGCAGUUGGACCa------GCCGG- -5'
7367 3' -57 NC_001900.1 + 30362 0.7 0.37736
Target:  5'- -cGCGAGgAUGUCcuucugcgccuuGAUCUGGUCGaGCUg -3'
miRNA:   3'- caCGCUCgUGCAG------------UUGGACCAGC-CGG- -5'
7367 3' -57 NC_001900.1 + 45968 0.7 0.37736
Target:  5'- cUGCuuGAGCACGUCGgucacgucaacgACCUucccgccggucgGGUCGGCg -3'
miRNA:   3'- cACG--CUCGUGCAGU------------UGGA------------CCAGCCGg -5'
7367 3' -57 NC_001900.1 + 18148 0.7 0.386216
Target:  5'- cUGCGucGGCGCaGUC-GCCgagugGGUCGGCUc -3'
miRNA:   3'- cACGC--UCGUG-CAGuUGGa----CCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 43736 0.7 0.386216
Target:  5'- aUGCGAuucggguugguGCA-GUCGGCCUGGaugaGGCCg -3'
miRNA:   3'- cACGCU-----------CGUgCAGUUGGACCag--CCGG- -5'
7367 3' -57 NC_001900.1 + 37768 0.69 0.395209
Target:  5'- cUGCaGAGCGCGUU--CCUGuG-CGGCCu -3'
miRNA:   3'- cACG-CUCGUGCAGuuGGAC-CaGCCGG- -5'
7367 3' -57 NC_001900.1 + 32268 0.69 0.395209
Target:  5'- -gGCGAGUugGUCAugUUcGGcagaaCGGCCc -3'
miRNA:   3'- caCGCUCGugCAGUugGA-CCa----GCCGG- -5'
7367 3' -57 NC_001900.1 + 20251 0.69 0.404335
Target:  5'- -cGgGGGcCACGUCAACCaGGUCguGGaCCa -3'
miRNA:   3'- caCgCUC-GUGCAGUUGGaCCAG--CC-GG- -5'
7367 3' -57 NC_001900.1 + 36724 0.69 0.404335
Target:  5'- uGUGCaGGUACGgCAGCUUGGU-GGCUg -3'
miRNA:   3'- -CACGcUCGUGCaGUUGGACCAgCCGG- -5'
7367 3' -57 NC_001900.1 + 12777 0.69 0.413594
Target:  5'- -aGCGAcCACGUCGuggagggcACCacGGUCGGCUu -3'
miRNA:   3'- caCGCUcGUGCAGU--------UGGa-CCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 31375 0.68 0.441165
Target:  5'- cUGCaGAGCGCccGUCAgcaucguGCCgaggGuGUCGGCCa -3'
miRNA:   3'- cACG-CUCGUG--CAGU-------UGGa---C-CAGCCGG- -5'
7367 3' -57 NC_001900.1 + 26870 0.68 0.471756
Target:  5'- uGUGCGAGCAuCGcUCGGuucuCCUGGUCuGUg -3'
miRNA:   3'- -CACGCUCGU-GC-AGUU----GGACCAGcCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.