Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7367 | 3' | -57 | NC_001900.1 | + | 31437 | 0.73 | 0.229811 |
Target: 5'- -cGCGgcAGCGCGaUCAcuACCUGGauccgaUCGGCCa -3' miRNA: 3'- caCGC--UCGUGC-AGU--UGGACC------AGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 6300 | 0.78 | 0.116617 |
Target: 5'- -cGCuGGCGCucUCAACCUGGUCGGCg -3' miRNA: 3'- caCGcUCGUGc-AGUUGGACCAGCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 45000 | 1.11 | 0.000395 |
Target: 5'- cGUGCGAGCACGUCAACCUGGUCGGCCu -3' miRNA: 3'- -CACGCUCGUGCAGUUGGACCAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 12777 | 0.69 | 0.413594 |
Target: 5'- -aGCGAcCACGUCGuggagggcACCacGGUCGGCUu -3' miRNA: 3'- caCGCUcGUGCAGU--------UGGa-CCAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 32268 | 0.69 | 0.395209 |
Target: 5'- -gGCGAGUugGUCAugUUcGGcagaaCGGCCc -3' miRNA: 3'- caCGCUCGugCAGUugGA-CCa----GCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 18148 | 0.7 | 0.386216 |
Target: 5'- cUGCGucGGCGCaGUC-GCCgagugGGUCGGCUc -3' miRNA: 3'- cACGC--UCGUG-CAGuUGGa----CCAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 22099 | 0.66 | 0.607194 |
Target: 5'- -aGCG-GCACGacaugaacaacgCAGCgaGGUgGGCCg -3' miRNA: 3'- caCGCuCGUGCa-----------GUUGgaCCAgCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 16911 | 0.67 | 0.502349 |
Target: 5'- -cGCGccGCuuGUCGGCUUGGUggcUGGCCu -3' miRNA: 3'- caCGCu-CGugCAGUUGGACCA---GCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 23296 | 0.68 | 0.492051 |
Target: 5'- --uCGAGCGaGUCAACaccacggcGGUCGGCCc -3' miRNA: 3'- cacGCUCGUgCAGUUGga------CCAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 36724 | 0.69 | 0.404335 |
Target: 5'- uGUGCaGGUACGgCAGCUUGGU-GGCUg -3' miRNA: 3'- -CACGcUCGUGCaGUUGGACCAgCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 48808 | 0.71 | 0.303973 |
Target: 5'- uGUGUGAGCugGUCacGugCUGGUgUGGUg -3' miRNA: 3'- -CACGCUCGugCAG--UugGACCA-GCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 18034 | 0.67 | 0.533778 |
Target: 5'- cGUGCcGGUgguccagauCGUCAucaACCUGGcugCGGCCg -3' miRNA: 3'- -CACGcUCGu--------GCAGU---UGGACCa--GCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 23565 | 0.71 | 0.319285 |
Target: 5'- uUGUGGcuGCGCGUCAacgacaacgcGCCUacGGUCGGCa -3' miRNA: 3'- cACGCU--CGUGCAGU----------UGGA--CCAGCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 35146 | 0.68 | 0.471756 |
Target: 5'- cGUGCGGGUA-GUCAGCgaGGaaUCGGUUc -3' miRNA: 3'- -CACGCUCGUgCAGUUGgaCC--AGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 40277 | 0.66 | 0.565878 |
Target: 5'- -cGCGGGuCAUGUCcucGACCgugUGGcCGGUCg -3' miRNA: 3'- caCGCUC-GUGCAG---UUGG---ACCaGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 20957 | 0.7 | 0.360062 |
Target: 5'- -gGCG-GU-CGUCAACCUGGcuggagaCGGCCa -3' miRNA: 3'- caCGCuCGuGCAGUUGGACCa------GCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 40312 | 0.74 | 0.206886 |
Target: 5'- -aGUGAGC-CGcugCGGCCgUGGUUGGCCg -3' miRNA: 3'- caCGCUCGuGCa--GUUGG-ACCAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 45968 | 0.7 | 0.37736 |
Target: 5'- cUGCuuGAGCACGUCGgucacgucaacgACCUucccgccggucgGGUCGGCg -3' miRNA: 3'- cACG--CUCGUGCAGU------------UGGA------------CCAGCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 43736 | 0.7 | 0.386216 |
Target: 5'- aUGCGAuucggguugguGCA-GUCGGCCUGGaugaGGCCg -3' miRNA: 3'- cACGCU-----------CGUgCAGUUGGACCag--CCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 37768 | 0.69 | 0.395209 |
Target: 5'- cUGCaGAGCGCGUU--CCUGuG-CGGCCu -3' miRNA: 3'- cACG-CUCGUGCAGuuGGAC-CaGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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