Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7367 | 3' | -57 | NC_001900.1 | + | 11437 | 0.66 | 0.598454 |
Target: 5'- cGUGCgGAGCGCGggCAACgcguuCUGGUcgCGGUa -3' miRNA: 3'- -CACG-CUCGUGCa-GUUG-----GACCA--GCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 13079 | 0.66 | 0.587555 |
Target: 5'- -gGCGAacauCGCGaUCAugCUGGUCGaGCa -3' miRNA: 3'- caCGCUc---GUGC-AGUugGACCAGC-CGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 5581 | 0.66 | 0.587555 |
Target: 5'- -gGCGGcGCAC--CGAgCUGGcCGGCCg -3' miRNA: 3'- caCGCU-CGUGcaGUUgGACCaGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 35083 | 0.66 | 0.586467 |
Target: 5'- cUGCucAGCACGUCGugCcgacguaccggacUGGUUGGCg -3' miRNA: 3'- cACGc-UCGUGCAGUugG-------------ACCAGCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 32791 | 0.66 | 0.562643 |
Target: 5'- -cGCGAGCGCGUaccgguccucauccCAACCUcGGUaCuGCUg -3' miRNA: 3'- caCGCUCGUGCA--------------GUUGGA-CCA-GcCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 42718 | 0.67 | 0.555115 |
Target: 5'- uUGCGcuGCugGUUGACCUuGacagCGGCCg -3' miRNA: 3'- cACGCu-CGugCAGUUGGAcCa---GCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 45810 | 0.67 | 0.502349 |
Target: 5'- -gGCaGAGCAUcuccagGUCGaacggguuGCCgaGGUCGGCCa -3' miRNA: 3'- caCG-CUCGUG------CAGU--------UGGa-CCAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 26870 | 0.68 | 0.471756 |
Target: 5'- uGUGCGAGCAuCGcUCGGuucuCCUGGUCuGUg -3' miRNA: 3'- -CACGCUCGU-GC-AGUU----GGACCAGcCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 31375 | 0.68 | 0.441165 |
Target: 5'- cUGCaGAGCGCccGUCAgcaucguGCCgaggGuGUCGGCCa -3' miRNA: 3'- cACG-CUCGUG--CAGU-------UGGa---C-CAGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 20251 | 0.69 | 0.404335 |
Target: 5'- -cGgGGGcCACGUCAACCaGGUCguGGaCCa -3' miRNA: 3'- caCgCUC-GUGCAGUUGGaCCAG--CC-GG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 37768 | 0.69 | 0.395209 |
Target: 5'- cUGCaGAGCGCGUU--CCUGuG-CGGCCu -3' miRNA: 3'- cACG-CUCGUGCAGuuGGAC-CaGCCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 43736 | 0.7 | 0.386216 |
Target: 5'- aUGCGAuucggguugguGCA-GUCGGCCUGGaugaGGCCg -3' miRNA: 3'- cACGCU-----------CGUgCAGUUGGACCag--CCGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 45968 | 0.7 | 0.37736 |
Target: 5'- cUGCuuGAGCACGUCGgucacgucaacgACCUucccgccggucgGGUCGGCg -3' miRNA: 3'- cACG--CUCGUGCAGU------------UGGA------------CCAGCCGg -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 30362 | 0.7 | 0.37736 |
Target: 5'- -cGCGAGgAUGUCcuucugcgccuuGAUCUGGUCGaGCUg -3' miRNA: 3'- caCGCUCgUGCAG------------UUGGACCAGC-CGG- -5' |
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7367 | 3' | -57 | NC_001900.1 | + | 12625 | 0.66 | 0.609381 |
Target: 5'- -gGCGAGC-UG-CGGCCcGGUgaGGCCg -3' miRNA: 3'- caCGCUCGuGCaGUUGGaCCAg-CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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