miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7367 3' -57 NC_001900.1 + 32791 0.66 0.562643
Target:  5'- -cGCGAGCGCGUaccgguccucauccCAACCUcGGUaCuGCUg -3'
miRNA:   3'- caCGCUCGUGCA--------------GUUGGA-CCA-GcCGG- -5'
7367 3' -57 NC_001900.1 + 35083 0.66 0.586467
Target:  5'- cUGCucAGCACGUCGugCcgacguaccggacUGGUUGGCg -3'
miRNA:   3'- cACGc-UCGUGCAGUugG-------------ACCAGCCGg -5'
7367 3' -57 NC_001900.1 + 35146 0.68 0.471756
Target:  5'- cGUGCGGGUA-GUCAGCgaGGaaUCGGUUc -3'
miRNA:   3'- -CACGCUCGUgCAGUUGgaCC--AGCCGG- -5'
7367 3' -57 NC_001900.1 + 36724 0.69 0.404335
Target:  5'- uGUGCaGGUACGgCAGCUUGGU-GGCUg -3'
miRNA:   3'- -CACGcUCGUGCaGUUGGACCAgCCGG- -5'
7367 3' -57 NC_001900.1 + 37768 0.69 0.395209
Target:  5'- cUGCaGAGCGCGUU--CCUGuG-CGGCCu -3'
miRNA:   3'- cACG-CUCGUGCAGuuGGAC-CaGCCGG- -5'
7367 3' -57 NC_001900.1 + 40277 0.66 0.565878
Target:  5'- -cGCGGGuCAUGUCcucGACCgugUGGcCGGUCg -3'
miRNA:   3'- caCGCUC-GUGCAG---UUGG---ACCaGCCGG- -5'
7367 3' -57 NC_001900.1 + 40312 0.74 0.206886
Target:  5'- -aGUGAGC-CGcugCGGCCgUGGUUGGCCg -3'
miRNA:   3'- caCGCUCGuGCa--GUUGG-ACCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 42718 0.67 0.555115
Target:  5'- uUGCGcuGCugGUUGACCUuGacagCGGCCg -3'
miRNA:   3'- cACGCu-CGugCAGUUGGAcCa---GCCGG- -5'
7367 3' -57 NC_001900.1 + 43736 0.7 0.386216
Target:  5'- aUGCGAuucggguugguGCA-GUCGGCCUGGaugaGGCCg -3'
miRNA:   3'- cACGCU-----------CGUgCAGUUGGACCag--CCGG- -5'
7367 3' -57 NC_001900.1 + 43827 0.7 0.350787
Target:  5'- -cGCGAGCgaggauuucggcaGCGUCGACacuCUGcGUCgGGCCg -3'
miRNA:   3'- caCGCUCG-------------UGCAGUUG---GAC-CAG-CCGG- -5'
7367 3' -57 NC_001900.1 + 45000 1.11 0.000395
Target:  5'- cGUGCGAGCACGUCAACCUGGUCGGCCu -3'
miRNA:   3'- -CACGCUCGUGCAGUUGGACCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 45810 0.67 0.502349
Target:  5'- -gGCaGAGCAUcuccagGUCGaacggguuGCCgaGGUCGGCCa -3'
miRNA:   3'- caCG-CUCGUG------CAGU--------UGGa-CCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 45968 0.7 0.37736
Target:  5'- cUGCuuGAGCACGUCGgucacgucaacgACCUucccgccggucgGGUCGGCg -3'
miRNA:   3'- cACG--CUCGUGCAGU------------UGGA------------CCAGCCGg -5'
7367 3' -57 NC_001900.1 + 48528 0.71 0.335169
Target:  5'- -cGCG-GCAUGUUccaGGCCgcgaGGUUGGCCg -3'
miRNA:   3'- caCGCuCGUGCAG---UUGGa---CCAGCCGG- -5'
7367 3' -57 NC_001900.1 + 48808 0.71 0.303973
Target:  5'- uGUGUGAGCugGUCacGugCUGGUgUGGUg -3'
miRNA:   3'- -CACGCUCGugCAG--UugGACCA-GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.