miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
743	5'	-61.5	AC_000020.1	+	7973	0.66	0.257173
	Target:  5'- -aGGCcuGUGCugauccugaGCUGGgaGGCUagGGCCa -3' miRNA:   3'- ccCCG--CACG---------UGACCgaCCGGuaCCGG- -5'
743	5'	-61.5	AC_000020.1	+	16739	0.66	0.257173
	Target:  5'- cGGGGgGgaguagGCugGC-GGCUGGUCAgagGGCUu -3' miRNA:   3'- -CCCCgCa-----CG--UGaCCGACCGGUa--CCGG- -5'
743	5'	-61.5	AC_000020.1	+	8857	0.67	0.231731
	Target:  5'- cGGGGUGcaggGCGCgGGuCUGGgCA-GGCUc -3' miRNA:   3'- -CCCCGCa---CGUGaCC-GACCgGUaCCGG- -5'
743	5'	-61.5	AC_000020.1	+	30179	0.67	0.202945
	Target:  5'- aGGGGCccGCugUGGCUGGaaa--GCCu -3' miRNA:   3'- -CCCCGcaCGugACCGACCgguacCGG- -5'
743	5'	-61.5	AC_000020.1	+	17713	0.68	0.197574
	Target:  5'- aGGG-GUGCAagGGCUgGGCCAgcaGGCUg -3' miRNA:   3'- cCCCgCACGUgaCCGA-CCGGUa--CCGG- -5'
743	5'	-61.5	AC_000020.1	+	30247	0.69	0.163352
	Target:  5'- cGGGCuGUGCGCaGGCUuuccaGCCAcagcgGGCCc -3' miRNA:   3'- cCCCG-CACGUGaCCGAc----CGGUa----CCGG- -5'
743	5'	-61.5	AC_000020.1	+	24519	0.69	0.145872
	Target:  5'- uGGGGCG-GCuucCUGaacaagcauggcaGCUGGCCAaauUGGCg -3' miRNA:   3'- -CCCCGCaCGu--GAC-------------CGACCGGU---ACCGg -5'
743	5'	-61.5	AC_000020.1	+	14377	0.7	0.123705
	Target:  5'- cGGGGCGUGcCAUga--UGGCCAUGcGCg -3' miRNA:   3'- -CCCCGCAC-GUGaccgACCGGUAC-CGg -5'
743	5'	-61.5	AC_000020.1	+	3189	0.75	0.055329
	Target:  5'- aGGGGCGcgGUACgUGGCUGuguauuuacaGCCAUGGaCCc -3' miRNA:   3'- -CCCCGCa-CGUG-ACCGAC----------CGGUACC-GG- -5'
743	5'	-61.5	AC_000020.1	+	19800	1.12	5.8e-05
	Target:  5'- gGGGGCGUGCACUGGCUGGCCAUGGCCu -3' miRNA:   3'- -CCCCGCACGUGACCGACCGGUACCGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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