Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7437 | 5' | -58.6 | NC_001902.1 | + | 22041 | 1.12 | 0.0001 |
Target: 5'- aUGAGAGUCCAUACCCCACCCCCACCCg -3' miRNA: 3'- -ACUCUCAGGUAUGGGGUGGGGGUGGG- -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 20493 | 0.66 | 0.319084 |
Target: 5'- cGAGGGUcugcccccuugagCCAUcacaGCCgCACCCUUACUCg -3' miRNA: 3'- aCUCUCA-------------GGUA----UGGgGUGGGGGUGGG- -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 18832 | 0.67 | 0.274179 |
Target: 5'- gGAG-GUCCucaaugACCUCAUCCCCugUg -3' miRNA: 3'- aCUCuCAGGua----UGGGGUGGGGGugGg -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 17980 | 0.66 | 0.344805 |
Target: 5'- uUGAGAGccucgggcagCCAaACUUC-CUCCCACCCu -3' miRNA: 3'- -ACUCUCa---------GGUaUGGGGuGGGGGUGGG- -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 17877 | 0.69 | 0.221561 |
Target: 5'- aGAGGGgCCAUuaUCCACCCUgACCUa -3' miRNA: 3'- aCUCUCaGGUAugGGGUGGGGgUGGG- -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 10531 | 0.71 | 0.163462 |
Target: 5'- aGAGAGUCU---CCCCACCCCaUACa- -3' miRNA: 3'- aCUCUCAGGuauGGGGUGGGG-GUGgg -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 8529 | 0.67 | 0.288809 |
Target: 5'- -uGGAGgaauucccCCAUAucCCCCACCCCuucugcagaugcCACCCu -3' miRNA: 3'- acUCUCa-------GGUAU--GGGGUGGGG------------GUGGG- -5' |
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7437 | 5' | -58.6 | NC_001902.1 | + | 143 | 0.66 | 0.362173 |
Target: 5'- aUGAGGG-CCAUGgcCCCCACaUCCACg- -3' miRNA: 3'- -ACUCUCaGGUAU--GGGGUGgGGGUGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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