Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
747 | 5' | -61.5 | AC_000020.1 | + | 23204 | 1.07 | 0.00012 |
Target: 5'- cUGCCGCUGCAACCUCUGCACCCCCCAc -3' miRNA: 3'- -ACGGCGACGUUGGAGACGUGGGGGGU- -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 17305 | 0.73 | 0.077691 |
Target: 5'- gUGCCGCUGUAaggcuugaaggagggGCCUCUGUcuaggguACCCCUg- -3' miRNA: 3'- -ACGGCGACGU---------------UGGAGACG-------UGGGGGgu -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 10852 | 0.71 | 0.105914 |
Target: 5'- cGCgCGCUcGCAacGCCUCcGCccgcuccgACCCCCCAc -3' miRNA: 3'- aCG-GCGA-CGU--UGGAGaCG--------UGGGGGGU- -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 1249 | 0.7 | 0.12933 |
Target: 5'- aGuaGCUGCuGACCUCUuuCugCCCCCAg -3' miRNA: 3'- aCggCGACG-UUGGAGAc-GugGGGGGU- -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 15360 | 0.69 | 0.133042 |
Target: 5'- cGCCGCaccGCAGCUgccaGCGCCCCCg- -3' miRNA: 3'- aCGGCGa--CGUUGGaga-CGUGGGGGgu -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 17770 | 0.69 | 0.153117 |
Target: 5'- aGCCuGCUGgccCAGCCcUUGCACCCCUg- -3' miRNA: 3'- aCGG-CGAC---GUUGGaGACGUGGGGGgu -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 14239 | 0.69 | 0.148894 |
Target: 5'- gGCgGCgGCGcCCUUUGCugCCCCaCGa -3' miRNA: 3'- aCGgCGaCGUuGGAGACGugGGGG-GU- -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 16259 | 0.67 | 0.207183 |
Target: 5'- aUGCCGCUcCAAa---UGC-CCCCCCAg -3' miRNA: 3'- -ACGGCGAcGUUggagACGuGGGGGGU- -5' |
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747 | 5' | -61.5 | AC_000020.1 | + | 17149 | 0.66 | 0.22456 |
Target: 5'- cGCaGCUGCAAgCgCUGCgACCUCUCAg -3' miRNA: 3'- aCGgCGACGUUgGaGACG-UGGGGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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