Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
755 | 5' | -50.4 | NC_000852.3 | + | 198862 | 0.69 | 0.996135 |
Target: 5'- aUGCAAAGAggaccccaguGCCUGCA-CGCCAGCa- -3' miRNA: 3'- cGCGUUUCU----------UGGAUGUgGUGGUUGgc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 202259 | 0.66 | 0.999819 |
Target: 5'- aUGCAAcAGAuggcGCCUGCugCACCGAa-- -3' miRNA: 3'- cGCGUU-UCU----UGGAUGugGUGGUUggc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 210768 | 0.66 | 0.999889 |
Target: 5'- -gGCAuGGAACUUcaACAaccCCACCAACUa -3' miRNA: 3'- cgCGUuUCUUGGA--UGU---GGUGGUUGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 220311 | 0.66 | 0.999771 |
Target: 5'- aCGCAGAcccucgugucauGAAcCCUGCACUugCuGCCGc -3' miRNA: 3'- cGCGUUU------------CUU-GGAUGUGGugGuUGGC- -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 229824 | 0.7 | 0.994007 |
Target: 5'- aCGCAGAGAACUUGCgggaGCCAuugUCAGCUa -3' miRNA: 3'- cGCGUUUCUUGGAUG----UGGU---GGUUGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 241469 | 0.66 | 0.999889 |
Target: 5'- cCGCAccAGAACCcGCGCCuauaCGACCu -3' miRNA: 3'- cGCGUu-UCUUGGaUGUGGug--GUUGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 241516 | 0.7 | 0.991021 |
Target: 5'- cGCGCc-AGAACCcGCGCCAgaacCCGcACCGa -3' miRNA: 3'- -CGCGuuUCUUGGaUGUGGU----GGU-UGGC- -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 245536 | 0.68 | 0.998544 |
Target: 5'- uGCGCGuacucucAAGAccGCCgUGCA-CACCGACCa -3' miRNA: 3'- -CGCGU-------UUCU--UGG-AUGUgGUGGUUGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 246116 | 0.66 | 0.999713 |
Target: 5'- uGCGUuauGAucAUCaACACCACCAAUCa -3' miRNA: 3'- -CGCGuuuCU--UGGaUGUGGUGGUUGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 256910 | 0.67 | 0.999642 |
Target: 5'- uGCGUcGAGAACCU-UACCAUCuguuAACCc -3' miRNA: 3'- -CGCGuUUCUUGGAuGUGGUGG----UUGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 273605 | 0.66 | 0.999889 |
Target: 5'- aCGCc-AGAACCUGCuCCuguGCCGagACCGa -3' miRNA: 3'- cGCGuuUCUUGGAUGuGG---UGGU--UGGC- -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 291703 | 0.68 | 0.999011 |
Target: 5'- -aGCGgcGAGCUUAUACaCACCAACa- -3' miRNA: 3'- cgCGUuuCUUGGAUGUG-GUGGUUGgc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 293635 | 0.75 | 0.906907 |
Target: 5'- gGCGUAAGGAaauGCCUauaaACACCGCUAuuGCCa -3' miRNA: 3'- -CGCGUUUCU---UGGA----UGUGGUGGU--UGGc -5' |
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755 | 5' | -50.4 | NC_000852.3 | + | 321985 | 0.67 | 0.999184 |
Target: 5'- -gGCGAAGAACCUGaGCUGCgAuACCGc -3' miRNA: 3'- cgCGUUUCUUGGAUgUGGUGgU-UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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