miRNA: 3'- -CUUCAU---GGUCUC---UUGGGGCUUCA----UGG- -5'
miRNA: 3'- -CUUCAUGGUCUCUUG------------GGGCUUc-----AUGG- -5'
miRNA: 3'- cuucAUGGUCUCUUGg-------GGCUUCaUGG- -5'
miRNA: 3'- cuuCAUGGU-CUCUUGGGGcuucAUGG- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 759 | 5' | -50 | NC_000852.3 | + | 88178 | 0.69 | 0.997479 |
|
Target: 5'- aGAAGUAuauUCGGAGcauGGCCUCGAAGUucuaACCc -3' miRNA: 3'- -CUUCAU---GGUCUC---UUGGGGCUUCA----UGG- -5' |
|||||||
| 759 | 5' | -50 | NC_000852.3 | + | 283491 | 0.7 | 0.995953 |
|
Target: 5'- aGGAGUGCCGGAGAAUaugugacauccuUCCGGAugaucuUGCCa -3' miRNA: 3'- -CUUCAUGGUCUCUUG------------GGGCUUc-----AUGG- -5' |
|||||||
| 759 | 5' | -50 | NC_000852.3 | + | 330028 | 0.71 | 0.989391 |
|
Target: 5'- ---uUGCCAGAGAACauauacaaCCGAAG-ACCu -3' miRNA: 3'- cuucAUGGUCUCUUGg-------GGCUUCaUGG- -5' |
|||||||
| 759 | 5' | -50 | NC_000852.3 | + | 142553 | 0.66 | 0.999907 |
|
Target: 5'- --uGUACCAcGAGAACCCUc---UGCCu -3' miRNA: 3'- cuuCAUGGU-CUCUUGGGGcuucAUGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home