Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7605 | 5' | -65.7 | NC_001963.1 | + | 2144 | 0.67 | 0.02133 |
Target: 5'- gGCCUCCgCUGcacGCGCCCgucuuuacggccgGGCCaCCGUa -3' miRNA: 3'- -CGGGGGgGACau-CGUGGG-------------CCGG-GGCG- -5' |
|||||||
7605 | 5' | -65.7 | NC_001963.1 | + | 2347 | 0.67 | 0.019377 |
Target: 5'- -aCCCCgCaGUgccggugccacAGCACCaGGCCCUGCg -3' miRNA: 3'- cgGGGGgGaCA-----------UCGUGGgCCGGGGCG- -5' |
|||||||
7605 | 5' | -65.7 | NC_001963.1 | + | 2384 | 0.67 | 0.018746 |
Target: 5'- cGCCCCUCagaUGccacGC-CCCGGCccgaaCCCGCa -3' miRNA: 3'- -CGGGGGGg--ACau--CGuGGGCCG-----GGGCG- -5' |
|||||||
7605 | 5' | -65.7 | NC_001963.1 | + | 2525 | 1.1 | 1e-06 |
Target: 5'- uGCCCCCCCUGUAGCACCCGGCCCCGCc -3' miRNA: 3'- -CGGGGGGGACAUCGUGGGCCGGGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home