miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 21057 1.08 0.001121
Target:  5'- gAGCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160794 1.08 0.001151
Target:  5'- aAGCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130773 1 0.004261
Target:  5'- -aCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 21156 0.95 0.009479
Target:  5'- cGCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- uCGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 127512 0.91 0.018411
Target:  5'- ---cUGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 151061 0.9 0.020468
Target:  5'- cAGaCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- -UC-GAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12345 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160697 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130695 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 72119 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 129301 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130871 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 16358 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12110 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 151346 0.86 0.038525
Target:  5'- cAGaUUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- -UC-GAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160382 0.86 0.041674
Target:  5'- aAGCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 16513 0.84 0.052708
Target:  5'- cGCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- uCGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 16435 0.84 0.052708
Target:  5'- cGCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- uCGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 96040 0.83 0.063206
Target:  5'- gAGCUCGGGCUgGGCGGucuguuCGCGUGGGAg -3'
miRNA:   3'- -UCGAGCUCGAgCCGCCc-----GCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 129147 0.82 0.073789
Target:  5'- ---aCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.