miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 2678 0.74 0.247324
Target:  5'- gAGCUCGAGCUCGGCcGaCGCGUAa-- -3'
miRNA:   3'- -UCGAGCUCGAGCCGcCcGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 2799 0.82 0.077681
Target:  5'- --aUUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 7260 0.68 0.563026
Target:  5'- uGCgcagCGGGCUCGGCGcgcGGCGCGc---- -3'
miRNA:   3'- uCGa---GCUCGAGCCGC---CCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 7443 0.74 0.253097
Target:  5'- cGCacgUGAGCUCGGCGgugcGGCGCGacgAGGAc -3'
miRNA:   3'- uCGa--GCUCGAGCCGC----CCGCGCa--UCCU- -5'
7633 3' -61.6 NC_001973.1 + 12110 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12190 0.8 0.113755
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12270 0.73 0.317005
Target:  5'- -----cAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgagcUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12345 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12423 0.76 0.20017
Target:  5'- -aCUUGAGCUCGGCuGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGcCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 16358 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 16435 0.84 0.052708
Target:  5'- cGCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- uCGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 16513 0.84 0.052708
Target:  5'- cGCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- uCGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 20950 0.8 0.102833
Target:  5'- cGGCgcgguaaacUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- -UCGa--------GCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 21057 1.08 0.001121
Target:  5'- gAGCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 21156 0.95 0.009479
Target:  5'- cGCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- uCGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 24124 0.66 0.699929
Target:  5'- gAGCcgggCGAGCUC-GCGGGUGCGc---- -3'
miRNA:   3'- -UCGa---GCUCGAGcCGCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 29975 0.68 0.57272
Target:  5'- cGGCUCGG---UGGUGGGCGCGUAu-- -3'
miRNA:   3'- -UCGAGCUcgaGCCGCCCGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 30386 0.66 0.690246
Target:  5'- gGGUgCGGGC-CGGCGcGGCggcgGCGgcGGAg -3'
miRNA:   3'- -UCGaGCUCGaGCCGC-CCG----CGCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 31039 0.78 0.144526
Target:  5'- uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGcGGAu -3'
miRNA:   3'- uCGAGCUCGa------------GCCGCCCG-CGCAU-CCU- -5'
7633 3' -61.6 NC_001973.1 + 32076 0.66 0.690246
Target:  5'- cAGCccagCGAGaa-GGUGGGCGCGggcAGGu -3'
miRNA:   3'- -UCGa---GCUCgagCCGCCCGCGCa--UCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.