miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 160794 1.08 0.001151
Target:  5'- aAGCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160697 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160619 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 160542 0.69 0.496702
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 160464 0.8 0.113755
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160382 0.86 0.041674
Target:  5'- aAGCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 152385 0.66 0.670755
Target:  5'- cGGC-CGGcGCg-GGCGGGCGCG-GGGc -3'
miRNA:   3'- -UCGaGCU-CGagCCGCCCGCGCaUCCu -5'
7633 3' -61.6 NC_001973.1 + 151346 0.86 0.038525
Target:  5'- cAGaUUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- -UC-GAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 151061 0.9 0.020468
Target:  5'- cAGaCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- -UC-GAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 150952 0.78 0.142398
Target:  5'- cAGaCUCGAGCUCGGCGGaCGCGUAa-- -3'
miRNA:   3'- -UC-GAGCUCGAGCCGCCcGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 146073 0.68 0.582452
Target:  5'- cGC-CGAGC-CGGCucGGGCGgGcgGGGAc -3'
miRNA:   3'- uCGaGCUCGaGCCG--CCCGCgCa-UCCU- -5'
7633 3' -61.6 NC_001973.1 + 144753 0.67 0.611823
Target:  5'- cGGC-CGAGga-GGCGGcGCGCG-AGGAc -3'
miRNA:   3'- -UCGaGCUCgagCCGCC-CGCGCaUCCU- -5'
7633 3' -61.6 NC_001973.1 + 136437 0.69 0.46935
Target:  5'- uGCgCGAGCgCaG-GGGCGCGUAGGGc -3'
miRNA:   3'- uCGaGCUCGaGcCgCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 132555 0.79 0.11665
Target:  5'- gGGCUCGAGCgcggCGGUGuGGCGCGccguguauuuUAGGAa -3'
miRNA:   3'- -UCGAGCUCGa---GCCGC-CCGCGC----------AUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130950 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 130871 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130773 1 0.004261
Target:  5'- -aCUCGAGCUCGGCGGGCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130695 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130618 0.82 0.077681
Target:  5'- ---cCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130540 0.71 0.368552
Target:  5'- ---cCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.