miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 41114 0.68 0.566898
Target:  5'- gAGCUCGAGUuuggucauuuaguugUCGGCGGcG-GCGgcGGu -3'
miRNA:   3'- -UCGAGCUCG---------------AGCCGCC-CgCGCauCCu -5'
7633 3' -61.6 NC_001973.1 + 41783 0.73 0.296636
Target:  5'- uGCcCGAGaaCGGCGGGCGCGagUGGGu -3'
miRNA:   3'- uCGaGCUCgaGCCGCCCGCGC--AUCCu -5'
7633 3' -61.6 NC_001973.1 + 44447 0.71 0.400484
Target:  5'- cGCUCGGGC---GCGGGCGCucgGGGAu -3'
miRNA:   3'- uCGAGCUCGagcCGCCCGCGca-UCCU- -5'
7633 3' -61.6 NC_001973.1 + 52726 0.69 0.487502
Target:  5'- cAGCUCGAGCgccaGGC-GGCGCGUc--- -3'
miRNA:   3'- -UCGAGCUCGag--CCGcCCGCGCAuccu -5'
7633 3' -61.6 NC_001973.1 + 53848 0.67 0.64132
Target:  5'- gAGCUCGccccGGCggCGGCGGcgccgccgaGCGCGgcGGc -3'
miRNA:   3'- -UCGAGC----UCGa-GCCGCC---------CGCGCauCCu -5'
7633 3' -61.6 NC_001973.1 + 55905 0.72 0.353254
Target:  5'- gGGCUCGGGCUCGGgcuCGGGCuCGggcucGGGc -3'
miRNA:   3'- -UCGAGCUCGAGCC---GCCCGcGCau---CCU- -5'
7633 3' -61.6 NC_001973.1 + 56409 0.66 0.699929
Target:  5'- aAGC-CGAGCUCGGUaucGGGCuCG-GGGc -3'
miRNA:   3'- -UCGaGCUCGAGCCG---CCCGcGCaUCCu -5'
7633 3' -61.6 NC_001973.1 + 56456 0.73 0.317005
Target:  5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UCGa---GCUCGAGCCG---------CCCGCgCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 56510 0.73 0.317005
Target:  5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UCGa---GCUCGAGCCG---------CCCGCgCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 56558 0.66 0.670755
Target:  5'- gAGCUCGAuaUCGGgcucuaugaCGGGCGCGg---- -3'
miRNA:   3'- -UCGAGCUcgAGCC---------GCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 57133 0.68 0.57272
Target:  5'- cAGCUCGcAGUUgGGCGauuGCGCGUcgagaaGGGAc -3'
miRNA:   3'- -UCGAGC-UCGAgCCGCc--CGCGCA------UCCU- -5'
7633 3' -61.6 NC_001973.1 + 60399 0.66 0.660963
Target:  5'- cGCUCGAGgagcugauCUUGcaGCGGGCGCGcucgcuGGAu -3'
miRNA:   3'- uCGAGCUC--------GAGC--CGCCCGCGCau----CCU- -5'
7633 3' -61.6 NC_001973.1 + 71937 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72024 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72119 0.88 0.02737
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 72200 0.72 0.345775
Target:  5'- uGCUgaaguUGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- uCGA-----GCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72284 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72362 0.68 0.563026
Target:  5'- -aCUCGAGCUCGGCcGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGcCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72462 0.7 0.45155
Target:  5'- uGCcuaacCGAGCUCGGCGGaCGCGUAa-- -3'
miRNA:   3'- uCGa----GCUCGAGCCGCCcGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 77014 0.7 0.425561
Target:  5'- --gUCGGGCggCGGCGGcGCGCGcaAGGAc -3'
miRNA:   3'- ucgAGCUCGa-GCCGCC-CGCGCa-UCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.