miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 7443 0.74 0.253097
Target:  5'- cGCacgUGAGCUCGGCGgugcGGCGCGacgAGGAc -3'
miRNA:   3'- uCGa--GCUCGAGCCGC----CCGCGCa--UCCU- -5'
7633 3' -61.6 NC_001973.1 + 2678 0.74 0.247324
Target:  5'- gAGCUCGAGCUCGGCcGaCGCGUAa-- -3'
miRNA:   3'- -UCGAGCUCGAGCCGcCcGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 12423 0.76 0.20017
Target:  5'- -aCUUGAGCUCGGCuGaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGcCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 128979 0.76 0.181844
Target:  5'- -aCUCGAGCUCGGCcaaCGCGUAGGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGcccGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 71937 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72024 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 72284 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 127432 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 129224 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 130950 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 160619 0.78 0.145961
Target:  5'- -aCUCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 31039 0.78 0.144526
Target:  5'- uGCUCGAGCgucugaacgccgaCGGCGGGCaGCGUGcGGAu -3'
miRNA:   3'- uCGAGCUCGa------------GCCGCCCG-CGCAU-CCU- -5'
7633 3' -61.6 NC_001973.1 + 150952 0.78 0.142398
Target:  5'- cAGaCUCGAGCUCGGCGGaCGCGUAa-- -3'
miRNA:   3'- -UC-GAGCUCGAGCCGCCcGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 127586 0.79 0.125754
Target:  5'- aAGCUCGAGCUCGGCGGuCGCcUAGa- -3'
miRNA:   3'- -UCGAGCUCGAGCCGCCcGCGcAUCcu -5'
7633 3' -61.6 NC_001973.1 + 132555 0.79 0.11665
Target:  5'- gGGCUCGAGCgcggCGGUGuGGCGCGccguguauuuUAGGAa -3'
miRNA:   3'- -UCGAGCUCGa---GCCGC-CCGCGC----------AUCCU- -5'
7633 3' -61.6 NC_001973.1 + 160464 0.8 0.113755
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 12190 0.8 0.113755
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 20950 0.8 0.102833
Target:  5'- cGGCgcgguaaacUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- -UCGa--------GCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 2799 0.82 0.077681
Target:  5'- --aUUGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgAGCUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 130618 0.82 0.077681
Target:  5'- ---cCGAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.