miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7633 3' -61.6 NC_001973.1 + 72362 0.68 0.563026
Target:  5'- -aCUCGAGCUCGGCcGaCGCGUAaGAu -3'
miRNA:   3'- ucGAGCUCGAGCCGcCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 83859 0.68 0.534233
Target:  5'- cGCgagCGAGCUCGcccgcGCGcGGCGCGagcucaGGGAg -3'
miRNA:   3'- uCGa--GCUCGAGC-----CGC-CCGCGCa-----UCCU- -5'
7633 3' -61.6 NC_001973.1 + 89101 0.69 0.496702
Target:  5'- cGUcgUCGAGCUCcGCGGGCGCGc---- -3'
miRNA:   3'- uCG--AGCUCGAGcCGCCCGCGCauccu -5'
7633 3' -61.6 NC_001973.1 + 95759 0.69 0.496702
Target:  5'- aAGaUCGuGCUCGGCguggccauguacGGGCGCGgcuGGAc -3'
miRNA:   3'- -UCgAGCuCGAGCCG------------CCCGCGCau-CCU- -5'
7633 3' -61.6 NC_001973.1 + 127356 0.69 0.496702
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 160542 0.69 0.496702
Target:  5'- ---cUGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 52726 0.69 0.487502
Target:  5'- cAGCUCGAGCgccaGGC-GGCGCGUc--- -3'
miRNA:   3'- -UCGAGCUCGag--CCGcCCGCGCAuccu -5'
7633 3' -61.6 NC_001973.1 + 136437 0.69 0.46935
Target:  5'- uGCgCGAGCgCaG-GGGCGCGUAGGGc -3'
miRNA:   3'- uCGaGCUCGaGcCgCCCGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 72462 0.7 0.45155
Target:  5'- uGCcuaacCGAGCUCGGCGGaCGCGUAa-- -3'
miRNA:   3'- uCGa----GCUCGAGCCGCCcGCGCAUccu -5'
7633 3' -61.6 NC_001973.1 + 77014 0.7 0.425561
Target:  5'- --gUCGGGCggCGGCGGcGCGCGcaAGGAc -3'
miRNA:   3'- ucgAGCUCGa-GCCGCC-CGCGCa-UCCU- -5'
7633 3' -61.6 NC_001973.1 + 83950 0.71 0.408739
Target:  5'- cGCUCG-Ga--GGCGGGCGCGUcgAGGc -3'
miRNA:   3'- uCGAGCuCgagCCGCCCGCGCA--UCCu -5'
7633 3' -61.6 NC_001973.1 + 44447 0.71 0.400484
Target:  5'- cGCUCGGGC---GCGGGCGCucgGGGAu -3'
miRNA:   3'- uCGAGCUCGagcCGCCCGCGca-UCCU- -5'
7633 3' -61.6 NC_001973.1 + 130540 0.71 0.368552
Target:  5'- ---cCGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- ucgaGCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 55905 0.72 0.353254
Target:  5'- gGGCUCGGGCUCGGgcuCGGGCuCGggcucGGGc -3'
miRNA:   3'- -UCGAGCUCGAGCC---GCCCGcGCau---CCU- -5'
7633 3' -61.6 NC_001973.1 + 72200 0.72 0.345775
Target:  5'- uGCUgaaguUGAGCUCGGCGGaCGCGUAaGAu -3'
miRNA:   3'- uCGA-----GCUCGAGCCGCCcGCGCAUcCU- -5'
7633 3' -61.6 NC_001973.1 + 96880 0.72 0.33841
Target:  5'- uGGCcgCGGaucuguGCgCGGCGGGCGCGUcGGAu -3'
miRNA:   3'- -UCGa-GCU------CGaGCCGCCCGCGCAuCCU- -5'
7633 3' -61.6 NC_001973.1 + 56456 0.73 0.317005
Target:  5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UCGa---GCUCGAGCCG---------CCCGCgCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 56510 0.73 0.317005
Target:  5'- gGGCggggCGGGCUCGGCgccaagcucGGGCGgGgcGGGc -3'
miRNA:   3'- -UCGa---GCUCGAGCCG---------CCCGCgCauCCU- -5'
7633 3' -61.6 NC_001973.1 + 12270 0.73 0.317005
Target:  5'- -----cAGCUCGGCGGaCGCGUAGGAu -3'
miRNA:   3'- ucgagcUCGAGCCGCCcGCGCAUCCU- -5'
7633 3' -61.6 NC_001973.1 + 41783 0.73 0.296636
Target:  5'- uGCcCGAGaaCGGCGGGCGCGagUGGGu -3'
miRNA:   3'- uCGaGCUCgaGCCGCCCGCGC--AUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.