miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 3' -53.7 NC_001973.1 + 8170 0.66 0.95804
Target:  5'- cCGUCGGC--GGGUCGAcggaCGAGcgCGc -3'
miRNA:   3'- -GCAGCCGauCCCAGCUa---GCUCaaGUu -5'
7634 3' -53.7 NC_001973.1 + 160827 0.69 0.889074
Target:  5'- gCGUCGGCcGGaGUCGAucaUCGAGgUCGAg -3'
miRNA:   3'- -GCAGCCGaUCcCAGCU---AGCUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 127383 0.69 0.889074
Target:  5'- aCGUgcCGGCaAGGGgCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCA--GCCGaUCCCaGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 151380 0.69 0.874878
Target:  5'- gCGUCGGCcGGGGUCG-UCuGAGgUUAGa -3'
miRNA:   3'- -GCAGCCGaUCCCAGCuAG-CUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 129332 0.72 0.763371
Target:  5'- gCGcCGGCaAGGGUCGAUaGAGgUCAAg -3'
miRNA:   3'- -GCaGCCGaUCCCAGCUAgCUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 160491 0.74 0.652613
Target:  5'- aCGUgcCGGCcAGGGUCGAUgGAGgUCGAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGCUAgCUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 130645 0.74 0.631903
Target:  5'- aCGUgcCGGCaAGGGUCaAUCGAGUUUAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 129010 0.74 0.621544
Target:  5'- gCGUCGGCcAGGGUCGAUaaAGgUCAAa -3'
miRNA:   3'- -GCAGCCGaUCCCAGCUAgcUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 127539 0.74 0.621544
Target:  5'- aCGUgcCGGCaAGGGUCGAUgGAGgUCAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGCUAgCUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 12141 0.76 0.519617
Target:  5'- gCGUCuGCcGGGGUCaAUCGAGUUCGAg -3'
miRNA:   3'- -GCAGcCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 128947 0.77 0.461617
Target:  5'- gCGcCGGCUAGGGUCGAU-GAGaUCAu -3'
miRNA:   3'- -GCaGCCGAUCCCAGCUAgCUCaAGUu -5'
7634 3' -53.7 NC_001973.1 + 160728 0.78 0.433921
Target:  5'- gCGcCGGCaAGGGUCaAUCGGGUUCAAg -3'
miRNA:   3'- -GCaGCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 130726 0.78 0.424905
Target:  5'- gCGUCGGCcGGGG-CaAUCGAGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCaGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 127461 0.78 0.416002
Target:  5'- aCGUgcCGGCaAGGGUCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 72235 0.78 0.416002
Target:  5'- aCGUgcCGGCcGGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 16465 0.78 0.416002
Target:  5'- aCGUgcCGGCcGGGGUCaAUCGAGUUCAAg -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 12295 0.78 0.416002
Target:  5'- aCGUgcCGGCcAGGGUCaAUCGAGUUCAAa -3'
miRNA:   3'- -GCA--GCCGaUCCCAGcUAGCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 130981 0.79 0.381561
Target:  5'- gCGUCGGCgAGGGUCGAUUgGAGgUCAAc -3'
miRNA:   3'- -GCAGCCGaUCCCAGCUAG-CUCaAGUU- -5'
7634 3' -53.7 NC_001973.1 + 129176 0.8 0.326033
Target:  5'- gCGUCGGCaAGGGUCaAUgGAGUUCAAa -3'
miRNA:   3'- -GCAGCCGaUCCCAGcUAgCUCAAGUU- -5'
7634 3' -53.7 NC_001973.1 + 129255 0.84 0.186536
Target:  5'- gCGUCGGCaAGGGUC-AUCGGGUUCAAg -3'
miRNA:   3'- -GCAGCCGaUCCCAGcUAGCUCAAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.