miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 158854 0.7 0.832686
Target:  5'- -----cGCCCAAAC-CGAGCUC-GCGa -3'
miRNA:   3'- guaguaCGGGUUUGaGCUCGAGcCGC- -5'
7634 5' -53.9 NC_001973.1 + 58455 0.7 0.832686
Target:  5'- --gCGUGCCCGAaauagccgcccGCUgccaaaCGuGCUCGGCGg -3'
miRNA:   3'- guaGUACGGGUU-----------UGA------GCuCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56275 0.7 0.832686
Target:  5'- aGUCcucGCCCucggauacuAACcCGAGCUCGGCGc -3'
miRNA:   3'- gUAGua-CGGGu--------UUGaGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 58030 0.7 0.824157
Target:  5'- -----cGCUCGAuCUCGGGCUCcGGCGg -3'
miRNA:   3'- guaguaCGGGUUuGAGCUCGAG-CCGC- -5'
7634 5' -53.9 NC_001973.1 + 56397 0.71 0.788331
Target:  5'- gUAUCggGCUCgAAGC-CGAGCUCGGUa -3'
miRNA:   3'- -GUAGuaCGGG-UUUGaGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 7426 0.71 0.778991
Target:  5'- gGUCAaGUUCAagGACUCgcacguGAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGU--UUGAG------CUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 2529 0.72 0.710358
Target:  5'- uGUCcUGCgCGAACUCGAcCUCGGCc -3'
miRNA:   3'- gUAGuACGgGUUUGAGCUcGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 48857 0.72 0.700204
Target:  5'- -uUCAcGCUCAGAUaCGuGCUCGGCGg -3'
miRNA:   3'- guAGUaCGGGUUUGaGCuCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56522 0.73 0.669424
Target:  5'- -cUCG-GCgCCAAGCUCGGGCggGGCGg -3'
miRNA:   3'- guAGUaCG-GGUUUGAGCUCGagCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56495 0.73 0.669424
Target:  5'- -cUCG-GCgCCAAGCUCGGGCggGGCGg -3'
miRNA:   3'- guAGUaCG-GGUUUGAGCUCGagCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56468 0.73 0.669424
Target:  5'- -cUCG-GCgCCAAGCUCGGGCggGGCGg -3'
miRNA:   3'- guAGUaCG-GGUUUGAGCUCGagCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56441 0.73 0.669424
Target:  5'- -cUCG-GCgCCAAGCUCGGGCggGGCGg -3'
miRNA:   3'- guAGUaCG-GGUUUGAGCUCGagCCGC- -5'
7634 5' -53.9 NC_001973.1 + 121682 0.73 0.65909
Target:  5'- -----cGCCCGGAUaccgguacgCGAGCUCGGCGg -3'
miRNA:   3'- guaguaCGGGUUUGa--------GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 32524 0.73 0.648734
Target:  5'- aAUCGUccaaGUCCAAGuucgCGAGCUCGGCGa -3'
miRNA:   3'- gUAGUA----CGGGUUUga--GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 96035 0.74 0.627989
Target:  5'- -----cGCgCGAGCUCGGGCUgGGCGg -3'
miRNA:   3'- guaguaCGgGUUUGAGCUCGAgCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56357 0.74 0.607257
Target:  5'- -cUCggGCCCcGACUCGGcgccgcGCUCGGCGc -3'
miRNA:   3'- guAGuaCGGGuUUGAGCU------CGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 55902 0.76 0.47677
Target:  5'- -cUCggGCUCGGGCUCGGGCUCGGg- -3'
miRNA:   3'- guAGuaCGGGUUUGAGCUCGAGCCgc -5'
7634 5' -53.9 NC_001973.1 + 21258 0.79 0.378095
Target:  5'- gAUCAUGUCCAAA-UCGAGCcgCGGCGu -3'
miRNA:   3'- gUAGUACGGGUUUgAGCUCGa-GCCGC- -5'
7634 5' -53.9 NC_001973.1 + 2787 0.79 0.369826
Target:  5'- gAUCAcGCCUAAAUU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 151335 0.79 0.353663
Target:  5'- cCGUCAaaGgUCAGAUUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUa-CgGGUUUGAGCUCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.