miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 4327 0.67 0.939642
Target:  5'- -----aGCCCGcGCUCGAcgaccuCUCGGCGg -3'
miRNA:   3'- guaguaCGGGUuUGAGCUc-----GAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 144188 0.67 0.93474
Target:  5'- ---gGUGCUCGAAuaccagcaggcuCUCGAGCgCGGCGc -3'
miRNA:   3'- guagUACGGGUUU------------GAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 114686 0.67 0.93474
Target:  5'- -----cGCCCGccgAGCUCGAGUUUGGgCGu -3'
miRNA:   3'- guaguaCGGGU---UUGAGCUCGAGCC-GC- -5'
7634 5' -53.9 NC_001973.1 + 10554 0.67 0.93474
Target:  5'- --aCGUGCUCGucgccguucugcAGCUCGAucacggcgcGCUCGGCa -3'
miRNA:   3'- guaGUACGGGU------------UUGAGCU---------CGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 62561 0.67 0.929594
Target:  5'- aCAUCAcccUGUgCGAggGCUCGAGCg-GGCGc -3'
miRNA:   3'- -GUAGU---ACGgGUU--UGAGCUCGagCCGC- -5'
7634 5' -53.9 NC_001973.1 + 117193 0.67 0.929066
Target:  5'- aCGUgCAUGCCCAc-CUCGuagaccaAGCgCGGCGg -3'
miRNA:   3'- -GUA-GUACGGGUuuGAGC-------UCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 52713 0.67 0.924203
Target:  5'- aGUCGaGCCgCcgcAGCUCGAGCgccaggCGGCGc -3'
miRNA:   3'- gUAGUaCGG-Gu--UUGAGCUCGa-----GCCGC- -5'
7634 5' -53.9 NC_001973.1 + 44585 0.67 0.92365
Target:  5'- -uUCGUguaGCCCGcggcggcGGCgagCGGGCUCGGCc -3'
miRNA:   3'- guAGUA---CGGGU-------UUGa--GCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 79798 0.68 0.912683
Target:  5'- ---aGUGUUCGAACUCGGGC-CGGUu -3'
miRNA:   3'- guagUACGGGUUUGAGCUCGaGCCGc -5'
7634 5' -53.9 NC_001973.1 + 16598 0.68 0.90019
Target:  5'- gAUCAUuCCCAAACUUGAGCUaucgauggaGGUc -3'
miRNA:   3'- gUAGUAcGGGUUUGAGCUCGAg--------CCGc -5'
7634 5' -53.9 NC_001973.1 + 944 0.68 0.90019
Target:  5'- ---gAUGCUCAGACU-GAGCUucCGGCGc -3'
miRNA:   3'- guagUACGGGUUUGAgCUCGA--GCCGC- -5'
7634 5' -53.9 NC_001973.1 + 96514 0.69 0.879671
Target:  5'- gCAUCGUGCgCUucGCUCGAGCgc-GCGa -3'
miRNA:   3'- -GUAGUACG-GGuuUGAGCUCGagcCGC- -5'
7634 5' -53.9 NC_001973.1 + 158570 0.69 0.872373
Target:  5'- -----cGCCCGAGC-CGcuucaacaaaaaAGCUCGGCGg -3'
miRNA:   3'- guaguaCGGGUUUGaGC------------UCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 55924 0.69 0.872373
Target:  5'- -----gGCUCGGGCUCGGGCUCGaGUa -3'
miRNA:   3'- guaguaCGGGUUUGAGCUCGAGC-CGc -5'
7634 5' -53.9 NC_001973.1 + 86847 0.69 0.872373
Target:  5'- uGUCGcgagGCCCAGuGCUCGcGCUgCGGCa -3'
miRNA:   3'- gUAGUa---CGGGUU-UGAGCuCGA-GCCGc -5'
7634 5' -53.9 NC_001973.1 + 155472 0.69 0.864853
Target:  5'- -----aGCCCGcuCUCGAGCcCGGUGa -3'
miRNA:   3'- guaguaCGGGUuuGAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 52790 0.69 0.857118
Target:  5'- cCGUCGagacucUGCgcggCGAACUCGGGCUCGaGCGc -3'
miRNA:   3'- -GUAGU------ACGg---GUUUGAGCUCGAGC-CGC- -5'
7634 5' -53.9 NC_001973.1 + 155424 0.69 0.849174
Target:  5'- cCGUUGaGCCCGcuCUCGGGCcCGGUGa -3'
miRNA:   3'- -GUAGUaCGGGUuuGAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 20942 0.69 0.848368
Target:  5'- uGUCGaGCCggcgcggUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGG-------GUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 108924 0.7 0.841027
Target:  5'- gCGUCAcgcucucgcUGCUCGcgAACUCGAGCaaGGCGc -3'
miRNA:   3'- -GUAGU---------ACGGGU--UUGAGCUCGagCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.