miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 20942 0.69 0.848368
Target:  5'- uGUCGaGCCggcgcggUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGG-------GUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 21046 1.1 0.004268
Target:  5'- aCAUCAUGCCCGAGCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 21146 0.86 0.135228
Target:  5'- gAUCAUGCUUc-GCUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGuuUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 21258 0.79 0.378095
Target:  5'- gAUCAUGUCCAAA-UCGAGCcgCGGCGu -3'
miRNA:   3'- gUAGUACGGGUUUgAGCUCGa-GCCGC- -5'
7634 5' -53.9 NC_001973.1 + 32524 0.73 0.648734
Target:  5'- aAUCGUccaaGUCCAAGuucgCGAGCUCGGCGa -3'
miRNA:   3'- gUAGUA----CGGGUUUga--GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 41105 0.66 0.965362
Target:  5'- gCGUCcg--CCGAGCUCGAGUuuggucauuuaguugUCGGCGg -3'
miRNA:   3'- -GUAGuacgGGUUUGAGCUCG---------------AGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 44585 0.67 0.92365
Target:  5'- -uUCGUguaGCCCGcggcggcGGCgagCGGGCUCGGCc -3'
miRNA:   3'- guAGUA---CGGGU-------UUGa--GCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 45624 0.67 0.944299
Target:  5'- gAUCAgGUCCAcGCgcucgUCGAGCgCGGCGu -3'
miRNA:   3'- gUAGUaCGGGUuUG-----AGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 46107 0.67 0.944299
Target:  5'- gCcgCGUGCCCGcGCUgGAcGCgCGGCu -3'
miRNA:   3'- -GuaGUACGGGUuUGAgCU-CGaGCCGc -5'
7634 5' -53.9 NC_001973.1 + 48857 0.72 0.700204
Target:  5'- -uUCAcGCUCAGAUaCGuGCUCGGCGg -3'
miRNA:   3'- guAGUaCGGGUUUGaGCuCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 51454 0.66 0.960546
Target:  5'- gCcgCGaGCCCGGg--CGAGCUCGaGCGg -3'
miRNA:   3'- -GuaGUaCGGGUUugaGCUCGAGC-CGC- -5'
7634 5' -53.9 NC_001973.1 + 52713 0.67 0.924203
Target:  5'- aGUCGaGCCgCcgcAGCUCGAGCgccaggCGGCGc -3'
miRNA:   3'- gUAGUaCGG-Gu--UUGAGCUCGa-----GCCGC- -5'
7634 5' -53.9 NC_001973.1 + 52790 0.69 0.857118
Target:  5'- cCGUCGagacucUGCgcggCGAACUCGGGCUCGaGCGc -3'
miRNA:   3'- -GUAGU------ACGg---GUUUGAGCUCGAGC-CGC- -5'
7634 5' -53.9 NC_001973.1 + 55902 0.76 0.47677
Target:  5'- -cUCggGCUCGGGCUCGGGCUCGGg- -3'
miRNA:   3'- guAGuaCGGGUUUGAGCUCGAGCCgc -5'
7634 5' -53.9 NC_001973.1 + 55924 0.69 0.872373
Target:  5'- -----gGCUCGGGCUCGGGCUCGaGUa -3'
miRNA:   3'- guaguaCGGGUUUGAGCUCGAGC-CGc -5'
7634 5' -53.9 NC_001973.1 + 56275 0.7 0.832686
Target:  5'- aGUCcucGCCCucggauacuAACcCGAGCUCGGCGc -3'
miRNA:   3'- gUAGua-CGGGu--------UUGaGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56357 0.74 0.607257
Target:  5'- -cUCggGCCCcGACUCGGcgccgcGCUCGGCGc -3'
miRNA:   3'- guAGuaCGGGuUUGAGCU------CGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56397 0.71 0.788331
Target:  5'- gUAUCggGCUCgAAGC-CGAGCUCGGUa -3'
miRNA:   3'- -GUAGuaCGGG-UUUGaGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 56441 0.73 0.669424
Target:  5'- -cUCG-GCgCCAAGCUCGGGCggGGCGg -3'
miRNA:   3'- guAGUaCG-GGUUUGAGCUCGagCCGC- -5'
7634 5' -53.9 NC_001973.1 + 56468 0.73 0.669424
Target:  5'- -cUCG-GCgCCAAGCUCGGGCggGGCGg -3'
miRNA:   3'- guAGUaCG-GGUUUGAGCUCGagCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.