miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 160450 0.94 0.045933
Target:  5'- aCAUCAUGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 127498 0.94 0.045933
Target:  5'- aCAUCAUGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12177 0.91 0.069267
Target:  5'- gAUCAUGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 71925 0.9 0.083736
Target:  5'- aCAUCAU-CCCuAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUAcGGGuUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 72012 0.9 0.083736
Target:  5'- aCAUCAU-CCCcAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUAcGGGuUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 72272 0.9 0.083736
Target:  5'- aCAUCAU-CCCuAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUAcGGGuUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 72107 0.9 0.083736
Target:  5'- aCAUCAU-CCCuAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUAcGGGuUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 16424 0.89 0.090783
Target:  5'- aCAUCAUGCUUc-GCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGuuUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 16502 0.89 0.090783
Target:  5'- aCAUCAUGCUUc-GCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGuuUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12411 0.87 0.12172
Target:  5'- gAUCAUuCCCAAACUUGAGCUCGGCu -3'
miRNA:   3'- gUAGUAcGGGUUUGAGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 21146 0.86 0.135228
Target:  5'- gAUCAUGCUUc-GCUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGuuUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 129044 0.86 0.142488
Target:  5'- aCAUCAUGCCUAAACU-GAGCUCGGUu -3'
miRNA:   3'- -GUAGUACGGGUUUGAgCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 151048 0.86 0.14625
Target:  5'- gGUCAuUGCagguCAGACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGU-ACGg---GUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12254 0.86 0.150103
Target:  5'- aCAUCAUGCCUAAAC-CcAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGaGcUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 72457 0.85 0.158086
Target:  5'- uGUCAUGCCU-AAC-CGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGuUUGaGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 72350 0.85 0.16645
Target:  5'- aCAUCAU-CCCuAACUCGAGCUCGGCc -3'
miRNA:   3'- -GUAGUAcGGGuUUGAGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 72522 0.83 0.203989
Target:  5'- uGUCAuaUGCCUAAACUCGAGCUaGGCGc -3'
miRNA:   3'- gUAGU--ACGGGUUUGAGCUCGAgCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160529 0.83 0.214458
Target:  5'- gAUCAcGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 127343 0.83 0.214458
Target:  5'- gAUCAcGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 150939 0.83 0.219863
Target:  5'- gGUCGUuggaGgUCAGACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUA----CgGGUUUGAGCUCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.