miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 160606 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130760 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12097 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130937 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 129288 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 129211 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 21046 1.1 0.004268
Target:  5'- aCAUCAUGCCCGAGCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12333 1.07 0.005982
Target:  5'- gAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130858 1.06 0.007491
Target:  5'- aCAUCAUGCCUAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 127419 1.06 0.007491
Target:  5'- aCAUCAUGCCUAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130683 1.03 0.011413
Target:  5'- gAUCAUGCCUAAACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160783 1.02 0.01313
Target:  5'- aCAUCAcGCCCAAGCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 127576 0.99 0.019974
Target:  5'- gAUCAcGCCCAAGCUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160372 0.99 0.019974
Target:  5'- gAUCAcGCCCAAGCUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 16345 0.98 0.024966
Target:  5'- aCAUCAcGCCUAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 128967 0.97 0.028693
Target:  5'- gAUCAUGCUCAAACUCGAGCUCGGCc -3'
miRNA:   3'- gUAGUACGGGUUUGAGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 2667 0.97 0.029501
Target:  5'- aCAUCAcGCCCGAGCUCGAGCUCGGCc -3'
miRNA:   3'- -GUAGUaCGGGUUUGAGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 130604 0.97 0.030332
Target:  5'- aCAUCAUGCCUAAAC-CGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGaGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160685 0.96 0.031186
Target:  5'- gAUCAUGCCUuAACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGuUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130526 0.96 0.033892
Target:  5'- aCAUCGUGCCUAAAC-CGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGaGCUCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.