miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 944 0.68 0.90019
Target:  5'- ---gAUGCUCAGACU-GAGCUucCGGCGc -3'
miRNA:   3'- guagUACGGGUUUGAgCUCGA--GCCGC- -5'
7634 5' -53.9 NC_001973.1 + 2529 0.72 0.710358
Target:  5'- uGUCcUGCgCGAACUCGAcCUCGGCc -3'
miRNA:   3'- gUAGuACGgGUUUGAGCUcGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 2667 0.97 0.029501
Target:  5'- aCAUCAcGCCCGAGCUCGAGCUCGGCc -3'
miRNA:   3'- -GUAGUaCGGGUUUGAGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 2787 0.79 0.369826
Target:  5'- gAUCAcGCCUAAAUU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 4327 0.67 0.939642
Target:  5'- -----aGCCCGcGCUCGAcgaccuCUCGGCGg -3'
miRNA:   3'- guaguaCGGGUuUGAGCUc-----GAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 5432 0.66 0.948715
Target:  5'- gAUCGcGUCCAAggaGC-CGAGCUCGGgCa -3'
miRNA:   3'- gUAGUaCGGGUU---UGaGCUCGAGCC-Gc -5'
7634 5' -53.9 NC_001973.1 + 7182 0.66 0.952893
Target:  5'- uCGUCAUGUCCAcgggCGGGUUCGuGCc -3'
miRNA:   3'- -GUAGUACGGGUuugaGCUCGAGC-CGc -5'
7634 5' -53.9 NC_001973.1 + 7248 0.66 0.960546
Target:  5'- cCGUCGaGCagauGCgcagCGGGCUCGGCGc -3'
miRNA:   3'- -GUAGUaCGgguuUGa---GCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 7426 0.71 0.778991
Target:  5'- gGUCAaGUUCAagGACUCgcacguGAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGU--UUGAG------CUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 9084 0.66 0.967294
Target:  5'- uGUCGcGCC---GCgUGAGCUCGGCGc -3'
miRNA:   3'- gUAGUaCGGguuUGaGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 10554 0.67 0.93474
Target:  5'- --aCGUGCUCGucgccguucugcAGCUCGAucacggcgcGCUCGGCa -3'
miRNA:   3'- guaGUACGGGU------------UUGAGCU---------CGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 12097 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12177 0.91 0.069267
Target:  5'- gAUCAUGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12254 0.86 0.150103
Target:  5'- aCAUCAUGCCUAAAC-CcAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGaGcUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12333 1.07 0.005982
Target:  5'- gAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 12411 0.87 0.12172
Target:  5'- gAUCAUuCCCAAACUUGAGCUCGGCu -3'
miRNA:   3'- gUAGUAcGGGUUUGAGCUCGAGCCGc -5'
7634 5' -53.9 NC_001973.1 + 16345 0.98 0.024966
Target:  5'- aCAUCAcGCCUAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 16424 0.89 0.090783
Target:  5'- aCAUCAUGCUUc-GCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGuuUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 16502 0.89 0.090783
Target:  5'- aCAUCAUGCUUc-GCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGuuUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 16598 0.68 0.90019
Target:  5'- gAUCAUuCCCAAACUUGAGCUaucgauggaGGUc -3'
miRNA:   3'- gUAGUAcGGGUUUGAGCUCGAg--------CCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.