miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7634 5' -53.9 NC_001973.1 + 160783 1.02 0.01313
Target:  5'- aCAUCAcGCCCAAGCUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160685 0.96 0.031186
Target:  5'- gAUCAUGCCUuAACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUACGGGuUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160606 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160529 0.83 0.214458
Target:  5'- gAUCAcGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160450 0.94 0.045933
Target:  5'- aCAUCAUGCCUAAACU-GAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAgCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 160372 0.99 0.019974
Target:  5'- gAUCAcGCCCAAGCUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUaCGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 158854 0.7 0.832686
Target:  5'- -----cGCCCAAAC-CGAGCUC-GCGa -3'
miRNA:   3'- guaguaCGGGUUUGaGCUCGAGcCGC- -5'
7634 5' -53.9 NC_001973.1 + 158570 0.69 0.872373
Target:  5'- -----cGCCCGAGC-CGcuucaacaaaaaAGCUCGGCGg -3'
miRNA:   3'- guaguaCGGGUUUGaGC------------UCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 155472 0.69 0.864853
Target:  5'- -----aGCCCGcuCUCGAGCcCGGUGa -3'
miRNA:   3'- guaguaCGGGUuuGAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 155424 0.69 0.849174
Target:  5'- cCGUUGaGCCCGcuCUCGGGCcCGGUGa -3'
miRNA:   3'- -GUAGUaCGGGUuuGAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 151335 0.79 0.353663
Target:  5'- cCGUCAaaGgUCAGAUUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUa-CgGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 151048 0.86 0.14625
Target:  5'- gGUCAuUGCagguCAGACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGU-ACGg---GUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 150939 0.83 0.219863
Target:  5'- gGUCGUuggaGgUCAGACUCGAGCUCGGCGg -3'
miRNA:   3'- gUAGUA----CgGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 144188 0.67 0.93474
Target:  5'- ---gGUGCUCGAAuaccagcaggcuCUCGAGCgCGGCGc -3'
miRNA:   3'- guagUACGGGUUU------------GAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 142499 0.66 0.964031
Target:  5'- gAUCAUGCgCAuACUCGAGCgcaacuUCGaCGu -3'
miRNA:   3'- gUAGUACGgGUuUGAGCUCG------AGCcGC- -5'
7634 5' -53.9 NC_001973.1 + 132539 0.66 0.960546
Target:  5'- -----cGCCgggcgcggcggCGGGCUCGAGCgCGGCGg -3'
miRNA:   3'- guaguaCGG-----------GUUUGAGCUCGaGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 132191 0.66 0.960546
Target:  5'- uCGUCGcUGUCCAuuUUCGGucucCUCGGCGg -3'
miRNA:   3'- -GUAGU-ACGGGUuuGAGCUc---GAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130937 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130858 1.06 0.007491
Target:  5'- aCAUCAUGCCUAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5'
7634 5' -53.9 NC_001973.1 + 130760 1.1 0.003923
Target:  5'- aCAUCAUGCCCAAACUCGAGCUCGGCGg -3'
miRNA:   3'- -GUAGUACGGGUUUGAGCUCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.