miRNA display CGI


Results 21 - 40 of 145 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 39457 0.66 0.777385
Target:  5'- uGCCCA-GCUCGAcGUaUCGGU--GCGCGu -3'
miRNA:   3'- -CGGGUuCGAGCU-CG-AGCCGccUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 17243 0.66 0.777385
Target:  5'- aGCCCAuauaaauguaCUCG-GCcgCGGCGGcCGCGc -3'
miRNA:   3'- -CGGGUuc--------GAGCuCGa-GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 137255 0.66 0.774689
Target:  5'- gGCUuuCGAGC-CGAGUgugCGGCGGcggggcucggccgcGCGCGu -3'
miRNA:   3'- -CGG--GUUCGaGCUCGa--GCCGCC--------------UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 123076 0.66 0.771079
Target:  5'- cGCCCGggcgagcAGCUCGcccgacagguacagcGGCagguugUCGGCGcGCGCGa -3'
miRNA:   3'- -CGGGU-------UCGAGC---------------UCG------AGCCGCcUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 89092 0.66 0.768359
Target:  5'- cGUCguuGUcgucgUCGAGCUCcGCGGGCGCGc -3'
miRNA:   3'- -CGGguuCG-----AGCUCGAGcCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 51561 0.67 0.711169
Target:  5'- cGCCCGGGCuauuuaaUCGAGC----CGGGCGCGc -3'
miRNA:   3'- -CGGGUUCG-------AGCUCGagccGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 76994 0.67 0.702489
Target:  5'- gGCgCCAcGCugaucaccucgUCGGGCggCGGCGGcGCGCGc -3'
miRNA:   3'- -CG-GGUuCG-----------AGCUCGa-GCCGCC-UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 86855 0.67 0.692793
Target:  5'- gGCCCAGuGCUCGcGCUgCGGCauGGucguCGUGa -3'
miRNA:   3'- -CGGGUU-CGAGCuCGA-GCCG--CCu---GCGC- -5'
7635 3' -60.1 NC_001973.1 + 44592 0.67 0.691821
Target:  5'- aGCCCGcggcggcGGCgagCGGGCUCGGCccGAC-CGg -3'
miRNA:   3'- -CGGGU-------UCGa--GCUCGAGCCGc-CUGcGC- -5'
7635 3' -60.1 NC_001973.1 + 124413 0.67 0.68305
Target:  5'- cCCCGAGgaguucCUCGcGCUgcacaaggaGGCGGACGCGc -3'
miRNA:   3'- cGGGUUC------GAGCuCGAg--------CCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 152378 0.67 0.68305
Target:  5'- aGCCgGacGGC-CGGcGCg-GGCGGGCGCGg -3'
miRNA:   3'- -CGGgU--UCGaGCU-CGagCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 136592 0.67 0.71213
Target:  5'- gGCgCGAcGCUC-AGCUCGuCGGGCGCc -3'
miRNA:   3'- -CGgGUU-CGAGcUCGAGCcGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 139888 0.67 0.71213
Target:  5'- --gCAAGCUCGAGCgcguggugUCGGUGcuGCGCGc -3'
miRNA:   3'- cggGUUCGAGCUCG--------AGCCGCc-UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 40176 0.67 0.715969
Target:  5'- gGCCCGAGCUgaucugcacgaCGGGCacgucuccgaacaGGUGcGACGCGa -3'
miRNA:   3'- -CGGGUUCGA-----------GCUCGag-----------CCGC-CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 40040 0.67 0.721708
Target:  5'- aGCCUGAGCUCGguguacAGCUCG-CGcACGCc -3'
miRNA:   3'- -CGGGUUCGAGC------UCGAGCcGCcUGCGc -5'
7635 3' -60.1 NC_001973.1 + 16967 0.67 0.721708
Target:  5'- uGCCCGAGUUUuuGGUcgUGGCGGcCGCGc -3'
miRNA:   3'- -CGGGUUCGAGc-UCGa-GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 4837 0.67 0.721708
Target:  5'- cGCCaCGAccGCUUaaAG-UCGGCGGGCGCGa -3'
miRNA:   3'- -CGG-GUU--CGAGc-UCgAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 85326 0.67 0.721708
Target:  5'- gGCUCAcGUUCGAGgUCGGCucuucgagcccGACGCGc -3'
miRNA:   3'- -CGGGUuCGAGCUCgAGCCGc----------CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 124494 0.67 0.721708
Target:  5'- cGCCCGcGCUCu-GC-CGGCGcuggccGACGCGu -3'
miRNA:   3'- -CGGGUuCGAGcuCGaGCCGC------CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 96759 0.67 0.731214
Target:  5'- cGCCggCGAG-UCGGGCggcgUGGCGGccaACGCGg -3'
miRNA:   3'- -CGG--GUUCgAGCUCGa---GCCGCC---UGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.