miRNA display CGI


Results 21 - 40 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 160690 0.9 0.030324
Target:  5'- uGCCUuaaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGuucGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 72114 0.89 0.033698
Target:  5'- cCCUAA-CUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 71932 0.89 0.033698
Target:  5'- cCCUAA-CUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 72279 0.89 0.033698
Target:  5'- cCCUAA-CUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 150933 0.88 0.04094
Target:  5'- cGCCgGGGUcguuggaggucagacUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGgUUCG---------------AGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 130532 0.86 0.054026
Target:  5'- uGCCUAAaC-CGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGaGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 130610 0.86 0.054026
Target:  5'- uGCCUAAaC-CGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGaGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 151057 0.86 0.058417
Target:  5'- aGgUCAGaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CgGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 72462 0.85 0.061533
Target:  5'- uGCCUAA-C-CGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGaGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 2792 0.85 0.068256
Target:  5'- cGCCUAAa-UUGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcgAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 72200 0.84 0.073757
Target:  5'- uGCUgAAGUU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGgUUCGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 127348 0.84 0.073757
Target:  5'- cGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160534 0.84 0.073757
Target:  5'- cGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12182 0.84 0.079681
Target:  5'- uGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160456 0.84 0.079681
Target:  5'- uGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 127504 0.83 0.092922
Target:  5'- uGCCUAAaCU-GAGCUCGGCGGGCGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 151342 0.82 0.100301
Target:  5'- aGgUCAGaUUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CgGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 96035 0.81 0.113839
Target:  5'- cGCgCGAGCUCGGGCUgGGCGGucuguuCGCGu -3'
miRNA:   3'- -CGgGUUCGAGCUCGAgCCGCCu-----GCGC- -5'
7635 3' -60.1 NC_001973.1 + 129133 0.81 0.122764
Target:  5'- uCCCu-GCgacuugaaCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cGGGuuCGa-------GCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12417 0.81 0.12907
Target:  5'- uCCCAAaCUUGAGCUCGGCuGACGCGu -3'
miRNA:   3'- cGGGUUcGAGCUCGAGCCGcCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.