miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 160377 1.1 0.001233
Target:  5'- cGCCCAAGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160789 1.09 0.001448
Target:  5'- cGCCCAAGCUCGAGCUCGGCGGGCGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 21052 1.08 0.001701
Target:  5'- uGCCCGAGCUCGAGCUCGGCGGGCGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 127581 1 0.006482
Target:  5'- cGCCCAAGCUCGAGCUCGGCGGuCGCc -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCuGCGc -5'
7635 3' -60.1 NC_001973.1 + 2673 0.99 0.007023
Target:  5'- cGCCCGAGCUCGAGCUCGGCcGACGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGcCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160612 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 129217 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12103 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12338 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 130943 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 129294 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 130766 0.97 0.009173
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGGCGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16415 0.97 0.009858
Target:  5'- aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUU--------------CGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16493 0.97 0.009858
Target:  5'- aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUU--------------CGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16351 0.95 0.013323
Target:  5'- cGCCUAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 130864 0.95 0.014431
Target:  5'- uGCCUAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 130688 0.95 0.014431
Target:  5'- uGCCUAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 127425 0.95 0.014431
Target:  5'- uGCCUAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 72019 0.93 0.018332
Target:  5'- cCCCAA-CUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 21152 0.9 0.028764
Target:  5'- -gCUucGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- cgGGuuCGAGCUCGAGCCGCCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.