miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 2673 0.99 0.007023
Target:  5'- cGCCCGAGCUCGAGCUCGGCcGACGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGcCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 2792 0.85 0.068256
Target:  5'- cGCCUAAa-UUGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcgAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 2855 0.78 0.186659
Target:  5'- aGCCCGAugagaucauGCuUUGAucacGCUCGGCGGACGCGc -3'
miRNA:   3'- -CGGGUU---------CG-AGCU----CGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 4327 0.75 0.278121
Target:  5'- aGCCCGcGCUCGAcgaccuCUCGGCGGcCGUGa -3'
miRNA:   3'- -CGGGUuCGAGCUc-----GAGCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 4837 0.67 0.721708
Target:  5'- cGCCaCGAccGCUUaaAG-UCGGCGGGCGCGa -3'
miRNA:   3'- -CGG-GUU--CGAGc-UCgAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 5158 0.66 0.756459
Target:  5'- gGCCCAgcugguugguguccGGCgCGAGCcacugcggcacUCuGGUGGGCGCu -3'
miRNA:   3'- -CGGGU--------------UCGaGCUCG-----------AG-CCGCCUGCGc -5'
7635 3' -60.1 NC_001973.1 + 5926 0.66 0.765629
Target:  5'- cGCCCGcggucgcgcgcacgAuGCgCGAcGCggcCGGCGGAUGCGa -3'
miRNA:   3'- -CGGGU--------------U-CGaGCU-CGa--GCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 7072 0.68 0.673269
Target:  5'- cGCCCuggucGAGCgCGAGUUgagucCGGCGcGCGCGa -3'
miRNA:   3'- -CGGG-----UUCGaGCUCGA-----GCCGCcUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 7250 0.68 0.633906
Target:  5'- -gUCGAGCagaugcgcagCGGGCUCGGCGcgcGGCGCGc -3'
miRNA:   3'- cgGGUUCGa---------GCUCGAGCCGC---CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 7425 0.71 0.45061
Target:  5'- uGgUCAAGUUCaaggacucgcacguGAGCUCGGCGGugcgGCGCGa -3'
miRNA:   3'- -CgGGUUCGAG--------------CUCGAGCCGCC----UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 7726 0.72 0.410238
Target:  5'- cGCCCGAcugacGCUgGAGCacCGGUGcGGCGCGa -3'
miRNA:   3'- -CGGGUU-----CGAgCUCGa-GCCGC-CUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 7854 0.66 0.759221
Target:  5'- cGCCCG---UCGAGCU-GGCgcgccaGGGCGCGu -3'
miRNA:   3'- -CGGGUucgAGCUCGAgCCG------CCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 10480 0.73 0.369846
Target:  5'- cGCCCGuGCUgGGGUUgcaCGaGCGGGCGCGc -3'
miRNA:   3'- -CGGGUuCGAgCUCGA---GC-CGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12103 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12182 0.84 0.079681
Target:  5'- uGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12260 0.76 0.236721
Target:  5'- uGCCUAAaC-CcAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGaGcUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12338 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 12417 0.81 0.12907
Target:  5'- uCCCAAaCUUGAGCUCGGCuGACGCGu -3'
miRNA:   3'- cGGGUUcGAGCUCGAGCCGcCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16351 0.95 0.013323
Target:  5'- cGCCUAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 16415 0.97 0.009858
Target:  5'- aGCCCGAugacaucaugcuucGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUU--------------CGAGCUCGAGCCGCCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.