miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7635 3' -60.1 NC_001973.1 + 160789 1.09 0.001448
Target:  5'- cGCCCAAGCUCGAGCUCGGCGGGCGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160690 0.9 0.030324
Target:  5'- uGCCUuaaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGuucGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160612 0.98 0.007815
Target:  5'- uGCCCAAaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160534 0.84 0.073757
Target:  5'- cGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160456 0.84 0.079681
Target:  5'- uGCCUAAaCU-GAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUcGAgCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 160377 1.1 0.001233
Target:  5'- cGCCCAAGCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGGUUCGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 158570 0.75 0.284485
Target:  5'- cGCCCGAGC-CGcuucaacaaaaaAGCUCGGCGGuccCGCc -3'
miRNA:   3'- -CGGGUUCGaGC------------UCGAGCCGCCu--GCGc -5'
7635 3' -60.1 NC_001973.1 + 152378 0.67 0.68305
Target:  5'- aGCCgGacGGC-CGGcGCg-GGCGGGCGCGg -3'
miRNA:   3'- -CGGgU--UCGaGCU-CGagCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 151342 0.82 0.100301
Target:  5'- aGgUCAGaUUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CgGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 151057 0.86 0.058417
Target:  5'- aGgUCAGaCUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CgGGUUcGAGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 150933 0.88 0.04094
Target:  5'- cGCCgGGGUcguuggaggucagacUCGAGCUCGGCGGACGCGu -3'
miRNA:   3'- -CGGgUUCG---------------AGCUCGAGCCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 150883 0.78 0.182202
Target:  5'- aGCCgGGGCgcguuccaCGAGCUCGGCcGACGCGu -3'
miRNA:   3'- -CGGgUUCGa-------GCUCGAGCCGcCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 146071 0.74 0.346951
Target:  5'- gGCgCCGAGC-CG-GCUCgGGCGGGCGgGg -3'
miRNA:   3'- -CG-GGUUCGaGCuCGAG-CCGCCUGCgC- -5'
7635 3' -60.1 NC_001973.1 + 146016 0.72 0.418639
Target:  5'- gGUCCGccGGCUCGAGCgCGGgucgaCGGACGgGg -3'
miRNA:   3'- -CGGGU--UCGAGCUCGaGCC-----GCCUGCgC- -5'
7635 3' -60.1 NC_001973.1 + 144717 0.75 0.284485
Target:  5'- cGUCCGAGgacaUCGAGCgccaggcggCGGCGGAgGCGg -3'
miRNA:   3'- -CGGGUUCg---AGCUCGa--------GCCGCCUgCGC- -5'
7635 3' -60.1 NC_001973.1 + 140045 0.73 0.377704
Target:  5'- cGCCCGGGCgcucgaCGAGaccaUC-GCGGACGCGc -3'
miRNA:   3'- -CGGGUUCGa-----GCUCg---AGcCGCCUGCGC- -5'
7635 3' -60.1 NC_001973.1 + 139888 0.67 0.71213
Target:  5'- --gCAAGCUCGAGCgcguggugUCGGUGcuGCGCGc -3'
miRNA:   3'- cggGUUCGAGCUCG--------AGCCGCc-UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 137255 0.66 0.774689
Target:  5'- gGCUuuCGAGC-CGAGUgugCGGCGGcggggcucggccgcGCGCGu -3'
miRNA:   3'- -CGG--GUUCGaGCUCGa--GCCGCC--------------UGCGC- -5'
7635 3' -60.1 NC_001973.1 + 137189 0.66 0.759221
Target:  5'- cGCUCAgccacucgcGGCgCGAGUcgcgCGGCGG-CGCGu -3'
miRNA:   3'- -CGGGU---------UCGaGCUCGa---GCCGCCuGCGC- -5'
7635 3' -60.1 NC_001973.1 + 136592 0.67 0.71213
Target:  5'- gGCgCGAcGCUC-AGCUCGuCGGGCGCc -3'
miRNA:   3'- -CGgGUU-CGAGcUCGAGCcGCCUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.