miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7637 3' -57.2 NC_001973.1 + 72469 0.66 0.880679
Target:  5'- cCGAGCUcGGCGgacGCguaaaaucuuacgcgUCGGCCggguCGCGGCa -3'
miRNA:   3'- -GUUUGA-CCGCaa-CG---------------AGCCGG----GCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 140387 0.66 0.877856
Target:  5'- -cGGCUGGCu---CUCGaGCCgCGCGACc -3'
miRNA:   3'- guUUGACCGcaacGAGC-CGG-GCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 55780 0.66 0.870649
Target:  5'- -----cGGCGUcGCUCGGCgCGCu-- -3'
miRNA:   3'- guuugaCCGCAaCGAGCCGgGCGcug -5'
7637 3' -57.2 NC_001973.1 + 121259 0.66 0.870649
Target:  5'- aCAGGgUGGCGacGCgCGGCCaauCGCGAa -3'
miRNA:   3'- -GUUUgACCGCaaCGaGCCGG---GCGCUg -5'
7637 3' -57.2 NC_001973.1 + 7941 0.66 0.863231
Target:  5'- -cGGCcGGCGUggUGCaCGcGCCCGCGuGCg -3'
miRNA:   3'- guUUGaCCGCA--ACGaGC-CGGGCGC-UG- -5'
7637 3' -57.2 NC_001973.1 + 7838 0.66 0.863231
Target:  5'- aGAACgGGCGgcGC-CGcGCCCGuCGAg -3'
miRNA:   3'- gUUUGaCCGCaaCGaGC-CGGGC-GCUg -5'
7637 3' -57.2 NC_001973.1 + 139512 0.66 0.863231
Target:  5'- uUAAAuCUGGacucaGUUucGCUCGGCCCGUaACc -3'
miRNA:   3'- -GUUU-GACCg----CAA--CGAGCCGGGCGcUG- -5'
7637 3' -57.2 NC_001973.1 + 62937 0.66 0.863231
Target:  5'- uCGGGCcGGCGUcgucaguagacuUGCgCGaGCCCGcCGGCg -3'
miRNA:   3'- -GUUUGaCCGCA------------ACGaGC-CGGGC-GCUG- -5'
7637 3' -57.2 NC_001973.1 + 95088 0.66 0.855607
Target:  5'- --cGCUGcaGCGcucgUGCgCGGgCCGCGACg -3'
miRNA:   3'- guuUGAC--CGCa---ACGaGCCgGGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 124205 0.66 0.855607
Target:  5'- -----cGGCGgcGCgcCGGCUCGUGACc -3'
miRNA:   3'- guuugaCCGCaaCGa-GCCGGGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 45643 0.66 0.855607
Target:  5'- uCGAGCgcGGCGUcGUacgCGGCCUGCG-Cg -3'
miRNA:   3'- -GUUUGa-CCGCAaCGa--GCCGGGCGCuG- -5'
7637 3' -57.2 NC_001973.1 + 131706 0.66 0.847784
Target:  5'- uCGAACaUGGCGUgGUa-GGCCCgGCGAUc -3'
miRNA:   3'- -GUUUG-ACCGCAaCGagCCGGG-CGCUG- -5'
7637 3' -57.2 NC_001973.1 + 85705 0.67 0.831564
Target:  5'- ---cUUGGCGUgcaaauagagGCUCGGCCgCaCGGCg -3'
miRNA:   3'- guuuGACCGCAa---------CGAGCCGG-GcGCUG- -5'
7637 3' -57.2 NC_001973.1 + 50179 0.67 0.831564
Target:  5'- --uGCaUGGCGUgcacgacuUGCUCGGCCguguaCGCGuCg -3'
miRNA:   3'- guuUG-ACCGCA--------ACGAGCCGG-----GCGCuG- -5'
7637 3' -57.2 NC_001973.1 + 5879 0.67 0.823182
Target:  5'- gAGGCUGGUGcgGCgcaGcGCgCGCGACg -3'
miRNA:   3'- gUUUGACCGCaaCGag-C-CGgGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 108108 0.67 0.823182
Target:  5'- -cAACaUGGUGUgGUggGGCUCGCGACc -3'
miRNA:   3'- guUUG-ACCGCAaCGagCCGGGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 56529 0.68 0.77886
Target:  5'- cCAAGCUcgGGCGgggcggGCUCGGCgCCGagcuCGAUa -3'
miRNA:   3'- -GUUUGA--CCGCaa----CGAGCCG-GGC----GCUG- -5'
7637 3' -57.2 NC_001973.1 + 112751 0.68 0.769572
Target:  5'- gCGAAC-GGCGaccgUGCggcCGGCUCGuCGACg -3'
miRNA:   3'- -GUUUGaCCGCa---ACGa--GCCGGGC-GCUG- -5'
7637 3' -57.2 NC_001973.1 + 7255 0.68 0.750642
Target:  5'- gCAGAUgcgcaGCGg-GCUCGGCgCGCGGCg -3'
miRNA:   3'- -GUUUGac---CGCaaCGAGCCGgGCGCUG- -5'
7637 3' -57.2 NC_001973.1 + 10994 0.68 0.741018
Target:  5'- --cGCUGGCGUU-CUUGGCUaugaugGCGACc -3'
miRNA:   3'- guuUGACCGCAAcGAGCCGGg-----CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.