miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7638 5' -61.5 NC_001973.1 + 37945 0.66 0.709559
Target:  5'- aGGCUGuucGAGCCGGUcaugaguuuGGCCuucGUGCGCa -3'
miRNA:   3'- -UCGAC---UUCGGCCG---------CUGGcu-CGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 36315 0.66 0.709559
Target:  5'- gGGCgccGcGGCCGacGCGGCCGAcGCGgGCc -3'
miRNA:   3'- -UCGa--CuUCGGC--CGCUGGCU-CGCgCGc -5'
7638 5' -61.5 NC_001973.1 + 23731 0.66 0.709559
Target:  5'- cGCUGAcgGGCCcgacGGCGACC--GCGCcCGg -3'
miRNA:   3'- uCGACU--UCGG----CCGCUGGcuCGCGcGC- -5'
7638 5' -61.5 NC_001973.1 + 69538 0.66 0.709559
Target:  5'- uAGCgc-AGCCGG-GAgUCGAGCGCGaCGu -3'
miRNA:   3'- -UCGacuUCGGCCgCU-GGCUCGCGC-GC- -5'
7638 5' -61.5 NC_001973.1 + 68011 0.66 0.709559
Target:  5'- aGGUUGucGAGaCUGGCGcCCGcGuCGCGCGg -3'
miRNA:   3'- -UCGAC--UUC-GGCCGCuGGCuC-GCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 65201 0.66 0.709559
Target:  5'- uGCUcGAcaugGGCCGGCa--CGAGCGCGaCa -3'
miRNA:   3'- uCGA-CU----UCGGCCGcugGCUCGCGC-Gc -5'
7638 5' -61.5 NC_001973.1 + 74119 0.66 0.709559
Target:  5'- cGgUGAcGCCGGUG-CCGucggggaauuGCGCGCa -3'
miRNA:   3'- uCgACUuCGGCCGCuGGCu---------CGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 157885 0.66 0.708598
Target:  5'- cGGCUcgugucgGAGGUC-GCGGCCgccgcgcccgcGAGCGCGCa -3'
miRNA:   3'- -UCGA-------CUUCGGcCGCUGG-----------CUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 52192 0.66 0.699929
Target:  5'- cGGC-GggGUCGcGCGACuCGAGCaGCGa- -3'
miRNA:   3'- -UCGaCuuCGGC-CGCUG-GCUCG-CGCgc -5'
7638 5' -61.5 NC_001973.1 + 65619 0.66 0.699929
Target:  5'- cAGCgacgcGCUaGCG-CCGAGCGCGCu -3'
miRNA:   3'- -UCGacuu-CGGcCGCuGGCUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 146117 0.66 0.699929
Target:  5'- cGCUG-AGCCGGCucgggagcgGGCCGGGgucaaGCGUu -3'
miRNA:   3'- uCGACuUCGGCCG---------CUGGCUCg----CGCGc -5'
7638 5' -61.5 NC_001973.1 + 67787 0.66 0.694125
Target:  5'- uGUUGAacuugacggagaauuGGCCGGUGGCCGGGuCGgucUGCa -3'
miRNA:   3'- uCGACU---------------UCGGCCGCUGGCUC-GC---GCGc -5'
7638 5' -61.5 NC_001973.1 + 60995 0.66 0.690246
Target:  5'- gAGUcGggGCCgaaGGCGcucuuCCGgcggaGGCGCGCGa -3'
miRNA:   3'- -UCGaCuuCGG---CCGCu----GGC-----UCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 143937 0.66 0.680519
Target:  5'- cAGUUGAucGUCGGCGggaacGCCGAGUG-GCa -3'
miRNA:   3'- -UCGACUu-CGGCCGC-----UGGCUCGCgCGc -5'
7638 5' -61.5 NC_001973.1 + 7852 0.66 0.670755
Target:  5'- cGCgcccgucGAGCUGGCGcGCCaGGGCGCGUu -3'
miRNA:   3'- uCGac-----UUCGGCCGC-UGG-CUCGCGCGc -5'
7638 5' -61.5 NC_001973.1 + 8848 0.66 0.670755
Target:  5'- cGCUGcuGGCgCGGCGACaCGGGCuguucgagagGUGCa -3'
miRNA:   3'- uCGACu-UCG-GCCGCUG-GCUCG----------CGCGc -5'
7638 5' -61.5 NC_001973.1 + 93744 0.66 0.660963
Target:  5'- aGGCgaGccGcCCGGCGACCagGAGCGgGCc -3'
miRNA:   3'- -UCGa-CuuC-GGCCGCUGG--CUCGCgCGc -5'
7638 5' -61.5 NC_001973.1 + 79076 0.66 0.660963
Target:  5'- gAGCUGGAGCgCGacgacaaguuucGCGACaagcuGGUGCGCGu -3'
miRNA:   3'- -UCGACUUCG-GC------------CGCUGgc---UCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 88818 0.66 0.65802
Target:  5'- uGC-GAGGCCGGuCGcaaaccucgcacacGCCcucGAGCGUGCGa -3'
miRNA:   3'- uCGaCUUCGGCC-GC--------------UGG---CUCGCGCGC- -5'
7638 5' -61.5 NC_001973.1 + 137254 0.66 0.655076
Target:  5'- gGGCUuucGAGCCGaGUGugCGGcggcggggcucggccGCGCGCGu -3'
miRNA:   3'- -UCGAc--UUCGGC-CGCugGCU---------------CGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.