miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 105344 0.72 0.921032
Target:  5'- cGCCGUguuguucUCGACGAAgcggcgcgGAGGCgUCGGCGg -3'
miRNA:   3'- uCGGCGa------AGUUGUUU--------UUUCG-AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 121670 0.72 0.937462
Target:  5'- cGUCGCUcgCGGCGcccGGAuaccgguacgcGAGCUCGGCGg -3'
miRNA:   3'- uCGGCGAa-GUUGU---UUU-----------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 4130 0.71 0.940463
Target:  5'- cGGCCGCguucgaccaccagUCGGCGAuuAAGUacUCGGUGg -3'
miRNA:   3'- -UCGGCGa------------AGUUGUUuuUUCG--AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 76451 0.71 0.941928
Target:  5'- cGCgCGCcUCGcCAAGGAcaugggcGGCUCGGCGg -3'
miRNA:   3'- uCG-GCGaAGUuGUUUUU-------UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 109452 0.71 0.947097
Target:  5'- uGGCCGCgUUCAggucgagcgugGCGAcguugcgcGAGAGCUUGGCc -3'
miRNA:   3'- -UCGGCG-AAGU-----------UGUU--------UUUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 39247 0.71 0.947097
Target:  5'- uGGCCGCUUUggUuuuGAGGGCgucgccgucgCGGCGc -3'
miRNA:   3'- -UCGGCGAAGuuGuu-UUUUCGa---------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 119121 0.71 0.948899
Target:  5'- cGGCCGCgcuggUCAucgggcuguucgacuACAugGAGAAGCUgGGCa -3'
miRNA:   3'- -UCGGCGa----AGU---------------UGU--UUUUUCGAgCCGc -5'
7639 3' -49.3 NC_001973.1 + 9530 0.71 0.951524
Target:  5'- gGGCCGCUUCcGCGAGccacacuuGAGCgccugugUGGCGu -3'
miRNA:   3'- -UCGGCGAAGuUGUUUu-------UUCGa------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 106594 0.71 0.955697
Target:  5'- cGCCGCcgUCaAGCGAAcGAGCgcgacCGGCGu -3'
miRNA:   3'- uCGGCGa-AG-UUGUUUuUUCGa----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 58467 0.7 0.959618
Target:  5'- uAGCCGCccgCugcCAAAcguGCUCGGCGg -3'
miRNA:   3'- -UCGGCGaa-Guu-GUUUuuuCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 119189 0.7 0.959618
Target:  5'- gAGCCGa--CGcCGAAGAAGCgCGGCGg -3'
miRNA:   3'- -UCGGCgaaGUuGUUUUUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 30095 0.7 0.963294
Target:  5'- cAGCCGCUcaucUCGGCucGAAcuguucGGUUCGGCc -3'
miRNA:   3'- -UCGGCGA----AGUUGuuUUU------UCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 129120 0.7 0.965384
Target:  5'- cGGUCGCaguacuucccugCGACuuGAacGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCGaa----------GUUGuuUU--UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 73567 0.7 0.966729
Target:  5'- cGGCCcucCUUCGGCGAGAAGuacucGUUCGGCu -3'
miRNA:   3'- -UCGGc--GAAGUUGUUUUUU-----CGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 32558 0.7 0.966729
Target:  5'- cGCCGCcgcCGACGccgccgucGGCUCGGCGc -3'
miRNA:   3'- uCGGCGaa-GUUGUuuuu----UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 9632 0.7 0.969931
Target:  5'- cGCCGCUggcguUCGGCucGAGGGCgCGGUa -3'
miRNA:   3'- uCGGCGA-----AGUUGuuUUUUCGaGCCGc -5'
7639 3' -49.3 NC_001973.1 + 52717 0.7 0.972907
Target:  5'- gAGCCGCcgCAGCuc--GAGCgccaggCGGCGc -3'
miRNA:   3'- -UCGGCGaaGUUGuuuuUUCGa-----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 8629 0.7 0.974035
Target:  5'- cGCCGCcgaggcCGACGAGAAAcgccaacgugacgcuGUUCGGCGa -3'
miRNA:   3'- uCGGCGaa----GUUGUUUUUU---------------CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 51452 0.69 0.975663
Target:  5'- aGGCCGCgagccCGGGcGAGCUCGaGCGg -3'
miRNA:   3'- -UCGGCGaaguuGUUUuUUCGAGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 129279 0.69 0.975663
Target:  5'- aAGCCGaugacaUCAugccCAAAcucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.