miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 158575 1.11 0.009105
Target:  5'- gAGCCGCUUCAACAAAAAAGCUCGGCGg -3'
miRNA:   3'- -UCGGCGAAGUUGUUUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 8591 0.77 0.725816
Target:  5'- gAGCCGC----GCGAGAAAGC-CGGCGg -3'
miRNA:   3'- -UCGGCGaaguUGUUUUUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 83671 0.77 0.725816
Target:  5'- cGCuCGCUUCGACGAc-GAGCUCGcGCa -3'
miRNA:   3'- uCG-GCGAAGUUGUUuuUUCGAGC-CGc -5'
7639 3' -49.3 NC_001973.1 + 61095 0.76 0.756552
Target:  5'- aGGCCGCgcggcCGACGGAGcAGCggCGGCGg -3'
miRNA:   3'- -UCGGCGaa---GUUGUUUUuUCGa-GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 44596 0.76 0.776451
Target:  5'- cGCgGCggCGGCGAGcgGGCUCGGCc -3'
miRNA:   3'- uCGgCGaaGUUGUUUuuUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 53817 0.75 0.802391
Target:  5'- gAGCCGCUgcagcuggucguagUCGACGAccGAGCUcgcccCGGCGg -3'
miRNA:   3'- -UCGGCGA--------------AGUUGUUuuUUCGA-----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 123248 0.75 0.823514
Target:  5'- cGCCGUUgcgUCAACAGAucgaccGUUCGGCGg -3'
miRNA:   3'- uCGGCGA---AGUUGUUUuuu---CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 38945 0.74 0.841056
Target:  5'- -aCCGUUUCAaugaccGCGAAGAGGC-CGGCGa -3'
miRNA:   3'- ucGGCGAAGU------UGUUUUUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 55790 0.74 0.841056
Target:  5'- cGGCgCGCUUCGG-AAAAAcGCUCGGCu -3'
miRNA:   3'- -UCG-GCGAAGUUgUUUUUuCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 95743 0.74 0.873551
Target:  5'- gGGCgCGCccgcCGACAAGAucguGCUCGGCGu -3'
miRNA:   3'- -UCG-GCGaa--GUUGUUUUuu--CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 137262 0.74 0.873551
Target:  5'- gAGCCGagugugCGGCGGcgGGGCUCGGCc -3'
miRNA:   3'- -UCGGCgaa---GUUGUUuuUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 20946 0.73 0.881092
Target:  5'- gAGCCGgcgCggUAAAcuGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCgaaGuuGUUUu-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 151039 0.73 0.895433
Target:  5'- cGGCCGaagggUCAuuGCAGGucagacucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCga---AGU--UGUUUu-------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 83461 0.73 0.895433
Target:  5'- cGCCGCgcucgUCGAgGAGGAGGUguggUCGGUGa -3'
miRNA:   3'- uCGGCGa----AGUUgUUUUUUCG----AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 126567 0.73 0.895433
Target:  5'- cAGCCGCgggUCcGCG----GGCUUGGCGa -3'
miRNA:   3'- -UCGGCGa--AGuUGUuuuuUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 109857 0.73 0.895433
Target:  5'- cGCCGCcgcCGACGAGGAcgcGGCgcgCGGCGu -3'
miRNA:   3'- uCGGCGaa-GUUGUUUUU---UCGa--GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 146064 0.73 0.902223
Target:  5'- gGGCCGCggCGcCGAGccGGCUCgGGCGg -3'
miRNA:   3'- -UCGGCGaaGUuGUUUuuUCGAG-CCGC- -5'
7639 3' -49.3 NC_001973.1 + 56374 0.73 0.902223
Target:  5'- cGCCGCgcUCGGCGcc-AGGCUCGGUa -3'
miRNA:   3'- uCGGCGa-AGUUGUuuuUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 125557 0.72 0.91441
Target:  5'- uGCaCGCUUUAgacggaaggccggGCuuAGAAGCUUGGCGg -3'
miRNA:   3'- uCG-GCGAAGU-------------UGuuUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 103910 0.72 0.915025
Target:  5'- cGCCGCggcgCGACGAGGAGcGCgucgucgCGGCGc -3'
miRNA:   3'- uCGGCGaa--GUUGUUUUUU-CGa------GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.