miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 1837 0.67 0.995654
Target:  5'- cGGCCagGCUgUGGCAcagguugggguuGGAGGGCUUGGCGa -3'
miRNA:   3'- -UCGG--CGAaGUUGU------------UUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 3852 0.67 0.994078
Target:  5'- gGGCCgGCUcgUCGaugugcaugACGAucgucAGCUCGGCGa -3'
miRNA:   3'- -UCGG-CGA--AGU---------UGUUuuu--UCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 4130 0.71 0.940463
Target:  5'- cGGCCGCguucgaccaccagUCGGCGAuuAAGUacUCGGUGg -3'
miRNA:   3'- -UCGGCGa------------AGUUGUUuuUUCG--AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 8221 0.66 0.99779
Target:  5'- gGGCCGCcaagCcGCGAGAGGuGCugauccgaUCGGCGg -3'
miRNA:   3'- -UCGGCGaa--GuUGUUUUUU-CG--------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 8591 0.77 0.725816
Target:  5'- gAGCCGC----GCGAGAAAGC-CGGCGg -3'
miRNA:   3'- -UCGGCGaaguUGUUUUUUCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 8629 0.7 0.974035
Target:  5'- cGCCGCcgaggcCGACGAGAAAcgccaacgugacgcuGUUCGGCGa -3'
miRNA:   3'- uCGGCGaa----GUUGUUUUUU---------------CGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 9084 0.68 0.990881
Target:  5'- uGUCGCgcc-GCGu--GAGCUCGGCGc -3'
miRNA:   3'- uCGGCGaaguUGUuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 9530 0.71 0.951524
Target:  5'- gGGCCGCUUCcGCGAGccacacuuGAGCgccugugUGGCGu -3'
miRNA:   3'- -UCGGCGAAGuUGUUUu-------UUCGa------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 9632 0.7 0.969931
Target:  5'- cGCCGCUggcguUCGGCucGAGGGCgCGGUa -3'
miRNA:   3'- uCGGCGA-----AGUUGuuUUUUCGaGCCGc -5'
7639 3' -49.3 NC_001973.1 + 10585 0.68 0.99207
Target:  5'- cGGCgCGC-UCGGCAAAGuauuGGCagUUGGCGa -3'
miRNA:   3'- -UCG-GCGaAGUUGUUUUu---UCG--AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 12401 0.66 0.99687
Target:  5'- aAGCCGaugagaUCAuuccCAAAcuuGAGCUCGGCu -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 16414 0.69 0.978209
Target:  5'- aAGCCcgaugacaucauGCUUC-GCuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCGG------------CGAAGuUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 16492 0.69 0.978209
Target:  5'- aAGCCcgaugacaucauGCUUC-GCuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCGG------------CGAAGuUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 17546 0.66 0.998158
Target:  5'- cGGCCGCguugaccgUCAACAGcgu-GCacauggaaUCGGCGc -3'
miRNA:   3'- -UCGGCGa-------AGUUGUUuuuuCG--------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 19258 0.67 0.993132
Target:  5'- aGGCCGCga-AGCGGAGAucgccgAGCuauuuugccgcgUCGGCGa -3'
miRNA:   3'- -UCGGCGaagUUGUUUUU------UCG------------AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 20113 0.68 0.99207
Target:  5'- cAGCCGCgggUCc----GAGGGCUUGGUGa -3'
miRNA:   3'- -UCGGCGa--AGuuguuUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 20946 0.73 0.881092
Target:  5'- gAGCCGgcgCggUAAAcuGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCgaaGuuGUUUu-UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 21144 0.67 0.996303
Target:  5'- gAGaucaUGCUUC-GCuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCg---GCGAAGuUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 24283 0.67 0.994078
Target:  5'- cGGgCGCcUCGGCGAAugGGCgaccaCGGCGc -3'
miRNA:   3'- -UCgGCGaAGUUGUUUuuUCGa----GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 25563 0.68 0.986288
Target:  5'- cGCCGCUUCAGCcgcc--GCccccuccuccuccUCGGCGc -3'
miRNA:   3'- uCGGCGAAGUUGuuuuuuCG-------------AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.