miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 3' -49.3 NC_001973.1 + 160675 0.67 0.994915
Target:  5'- aAGCCgaugagaucauGCcUUAACuc--GAGCUCGGCGg -3'
miRNA:   3'- -UCGG-----------CGaAGUUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 160513 0.67 0.994836
Target:  5'- aGGUCGagccCGAUGAGAucacgccuaaacuGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCgaa-GUUGUUUU-------------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 158575 1.11 0.009105
Target:  5'- gAGCCGCUUCAACAAAAAAGCUCGGCGg -3'
miRNA:   3'- -UCGGCGAAGUUGUUUUUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 158494 0.66 0.99687
Target:  5'- gAGCCGaUUCGACAAGAAacuccgaccGGCUUGuuuGCGc -3'
miRNA:   3'- -UCGGCgAAGUUGUUUUU---------UCGAGC---CGC- -5'
7639 3' -49.3 NC_001973.1 + 158452 0.66 0.99687
Target:  5'- gAGCCGgcUCGuCAAGAAAGUccgaUCGGCu -3'
miRNA:   3'- -UCGGCgaAGUuGUUUUUUCG----AGCCGc -5'
7639 3' -49.3 NC_001973.1 + 155602 0.66 0.998472
Target:  5'- cGuuGCUUCugAGCuugc-AGCUCGGCc -3'
miRNA:   3'- uCggCGAAG--UUGuuuuuUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 151039 0.73 0.895433
Target:  5'- cGGCCGaagggUCAuuGCAGGucagacucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCga---AGU--UGUUUu-------UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 150938 0.69 0.978209
Target:  5'- gGGUCGUUggagguCAGAcucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCGAaguu--GUUUu--UUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 150199 0.68 0.985764
Target:  5'- gGGCCGCggcUCGGCcucggcuuGCUgGGCGg -3'
miRNA:   3'- -UCGGCGa--AGUUGuuuuuu--CGAgCCGC- -5'
7639 3' -49.3 NC_001973.1 + 146064 0.73 0.902223
Target:  5'- gGGCCGCggCGcCGAGccGGCUCgGGCGg -3'
miRNA:   3'- -UCGGCGaaGUuGUUUuuUCGAG-CCGC- -5'
7639 3' -49.3 NC_001973.1 + 141930 0.67 0.994078
Target:  5'- cAGCgGCggCAACAAcAGcAGCUcgcCGGCGg -3'
miRNA:   3'- -UCGgCGaaGUUGUUuUU-UCGA---GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 139046 0.68 0.98646
Target:  5'- uGCCGCggaagUCGGCGAAGugccGUUCGaGCGc -3'
miRNA:   3'- uCGGCGa----AGUUGUUUUuu--CGAGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 137883 0.69 0.982703
Target:  5'- gGGCCGCgUCGGCGAGGcccGAGUgcaccUUGGUGa -3'
miRNA:   3'- -UCGGCGaAGUUGUUUU---UUCG-----AGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 137262 0.74 0.873551
Target:  5'- gAGCCGagugugCGGCGGcgGGGCUCGGCc -3'
miRNA:   3'- -UCGGCgaa---GUUGUUuuUUCGAGCCGc -5'
7639 3' -49.3 NC_001973.1 + 136860 0.67 0.995654
Target:  5'- cAGCCGCggauaCAGCuggcGGAGCUCGaCGg -3'
miRNA:   3'- -UCGGCGaa---GUUGuuu-UUUCGAGCcGC- -5'
7639 3' -49.3 NC_001973.1 + 134088 0.67 0.993132
Target:  5'- cGaCCGCUcggUCGGCc---AGGUUCGGCGg -3'
miRNA:   3'- uC-GGCGA---AGUUGuuuuUUCGAGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 133659 0.67 0.996303
Target:  5'- cAGCCGCcgUUGAUGAGcGAGCgcccgaacCGGCGa -3'
miRNA:   3'- -UCGGCGa-AGUUGUUUuUUCGa-------GCCGC- -5'
7639 3' -49.3 NC_001973.1 + 133279 0.67 0.995654
Target:  5'- cGGCCGCggc--CGAGAAcgcGGC-CGGCGg -3'
miRNA:   3'- -UCGGCGaaguuGUUUUU---UCGaGCCGC- -5'
7639 3' -49.3 NC_001973.1 + 132535 0.68 0.990881
Target:  5'- aGGCCGCcgggcgCGGCGGc-GGGCUCGaGCGc -3'
miRNA:   3'- -UCGGCGaa----GUUGUUuuUUCGAGC-CGC- -5'
7639 3' -49.3 NC_001973.1 + 129279 0.69 0.975663
Target:  5'- aAGCCGaugacaUCAugccCAAAcucGAGCUCGGCGg -3'
miRNA:   3'- -UCGGCga----AGUu---GUUUu--UUCGAGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.