miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 5' -63.3 NC_001973.1 + 112660 0.71 0.36059
Target:  5'- aGCCggucaGCCUCUucagcugGCCGUUGgCGCCGUc -3'
miRNA:   3'- -CGGagg--CGGAGG-------CGGCAACgGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 110342 0.68 0.503502
Target:  5'- uGCUggaCGCgUUCGCCGccucgGCgGCCGCg -3'
miRNA:   3'- -CGGag-GCGgAGGCGGCaa---CGgCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 109838 0.79 0.103133
Target:  5'- aCCUgCGCUUCCGCggCGUcGCCGCCGCc -3'
miRNA:   3'- cGGAgGCGGAGGCG--GCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 109495 0.76 0.160112
Target:  5'- gGCCgaacgaacgCCGCCgCCGCCGUUcGCCGCUugGCu -3'
miRNA:   3'- -CGGa--------GGCGGaGGCGGCAA-CGGCGG--CG- -5'
7639 5' -63.3 NC_001973.1 + 109136 0.66 0.597496
Target:  5'- gGCCUcuugggcgCCGCCUCgacgaGCCGggcgagccgGUCGcCCGCg -3'
miRNA:   3'- -CGGA--------GGCGGAGg----CGGCaa-------CGGC-GGCG- -5'
7639 5' -63.3 NC_001973.1 + 104241 0.69 0.439103
Target:  5'- cGCgCUgCGCgUCCGUcagcuguucggcggCGgcGCCGCCGCc -3'
miRNA:   3'- -CG-GAgGCGgAGGCG--------------GCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 103963 0.66 0.61674
Target:  5'- cGCCagCaGCCUa-GCCGgggcgUGCCGuuGCg -3'
miRNA:   3'- -CGGagG-CGGAggCGGCa----ACGGCggCG- -5'
7639 5' -63.3 NC_001973.1 + 99251 0.68 0.521868
Target:  5'- uGCgaCUGCCacaCCaGCCGUgUGCCGUCGUa -3'
miRNA:   3'- -CGgaGGCGGa--GG-CGGCA-ACGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 96436 0.72 0.298225
Target:  5'- uGCCUcCCGCCaCCGCCGUcuuggGCCcGUCGa -3'
miRNA:   3'- -CGGA-GGCGGaGGCGGCAa----CGG-CGGCg -5'
7639 5' -63.3 NC_001973.1 + 94901 0.66 0.645666
Target:  5'- cGUC-CCGCCgagCCGaCCGgcaaggugGUgGCCGCc -3'
miRNA:   3'- -CGGaGGCGGa--GGC-GGCaa------CGgCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 94521 0.67 0.531148
Target:  5'- aCCgCCGCC-CCGCCcg-GCgCGCCGg -3'
miRNA:   3'- cGGaGGCGGaGGCGGcaaCG-GCGGCg -5'
7639 5' -63.3 NC_001973.1 + 92001 0.67 0.568815
Target:  5'- cGCUUCCGCCagcUUgGCCGcaaucGCCuGUCGCu -3'
miRNA:   3'- -CGGAGGCGG---AGgCGGCaa---CGG-CGGCG- -5'
7639 5' -63.3 NC_001973.1 + 88143 0.67 0.578343
Target:  5'- cGCCcUCGUCggCgGCCGacGCCGCCGa -3'
miRNA:   3'- -CGGaGGCGGa-GgCGGCaaCGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 87330 0.68 0.503502
Target:  5'- gGCaCUCCGuUCUCgaCGCCGUaGCCGaCCaGCa -3'
miRNA:   3'- -CG-GAGGC-GGAG--GCGGCAaCGGC-GG-CG- -5'
7639 5' -63.3 NC_001973.1 + 87135 0.71 0.325172
Target:  5'- cGCCggugcgCCGCCUgCUGCauUUGCCGCCa- -3'
miRNA:   3'- -CGGa-----GGCGGA-GGCGgcAACGGCGGcg -5'
7639 5' -63.3 NC_001973.1 + 86968 0.76 0.176159
Target:  5'- cGCCgUCCGCC-CCGCCcgcGgcGCCGuCCGCc -3'
miRNA:   3'- -CGG-AGGCGGaGGCGG---CaaCGGC-GGCG- -5'
7639 5' -63.3 NC_001973.1 + 86041 0.66 0.61674
Target:  5'- uCCUCgGCCUUCcguuuGCCGagGCuCGCgGCg -3'
miRNA:   3'- cGGAGgCGGAGG-----CGGCaaCG-GCGgCG- -5'
7639 5' -63.3 NC_001973.1 + 85721 0.67 0.540488
Target:  5'- aGgCUCgGCCgcaCGgCGUUggaguuggucGCCGCCGCg -3'
miRNA:   3'- -CgGAGgCGGag-GCgGCAA----------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 83067 0.72 0.28353
Target:  5'- gGCCUCCuCCUCCuCCGgcgagcggcggcggcGCCGUCGCg -3'
miRNA:   3'- -CGGAGGcGGAGGcGGCaa-------------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 82945 0.71 0.354627
Target:  5'- cGCC-CCGuCCgaaccgacgcccgcgUCGCCGccGCCGCCGCc -3'
miRNA:   3'- -CGGaGGC-GGa--------------GGCGGCaaCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.