miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 5' -63.3 NC_001973.1 + 158609 1.11 0.000518
Target:  5'- cGCCUCCGCCUCCGCCGUUGCCGCCGCc -3'
miRNA:   3'- -CGGAGGCGGAGGCGGCAACGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 158547 0.83 0.054949
Target:  5'- uCCUCCGCCUCCGCCGccaccaccGCCcgaGCCGCu -3'
miRNA:   3'- cGGAGGCGGAGGCGGCaa------CGG---CGGCG- -5'
7639 5' -63.3 NC_001973.1 + 156145 0.71 0.36134
Target:  5'- uCCUUCGCUUCC-CCGUa--CGCCGCg -3'
miRNA:   3'- cGGAGGCGGAGGcGGCAacgGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 156098 0.68 0.4765
Target:  5'- aGCCgcagCCGCCgCCGCCGccauuuCCuCCGCa -3'
miRNA:   3'- -CGGa---GGCGGaGGCGGCaac---GGcGGCG- -5'
7639 5' -63.3 NC_001973.1 + 155621 0.7 0.384347
Target:  5'- -gCUCgGCCagCCGCCGagcUUGCaGCCGCu -3'
miRNA:   3'- cgGAGgCGGa-GGCGGC---AACGgCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 150922 0.68 0.521868
Target:  5'- uCCUaCGCgUCCGCCGggGUCGuuGg -3'
miRNA:   3'- cGGAgGCGgAGGCGGCaaCGGCggCg -5'
7639 5' -63.3 NC_001973.1 + 147819 0.7 0.384347
Target:  5'- uCCUUCGagaCUGCCGccGCCGCCGCu -3'
miRNA:   3'- cGGAGGCggaGGCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 146613 0.68 0.512652
Target:  5'- uGCUggagUCGCCUCCGUucgaccccaccaCGUaauaGCUGCCGCc -3'
miRNA:   3'- -CGGa---GGCGGAGGCG------------GCAa---CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 144370 0.74 0.222648
Target:  5'- aGCCgCCGCCgCCGCC---GCCGCCGa -3'
miRNA:   3'- -CGGaGGCGGaGGCGGcaaCGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 138999 0.72 0.298225
Target:  5'- cGCgUCCGaCUCCGCCGgcGCCaGCaGCu -3'
miRNA:   3'- -CGgAGGCgGAGGCGGCaaCGG-CGgCG- -5'
7639 5' -63.3 NC_001973.1 + 134381 0.66 0.636024
Target:  5'- gGCCgauuauUCCGCCUCCuuaucgagagcgGCCG--GCCGgCGUu -3'
miRNA:   3'- -CGG------AGGCGGAGG------------CGGCaaCGGCgGCG- -5'
7639 5' -63.3 NC_001973.1 + 133895 0.7 0.384347
Target:  5'- aCCUCguucucggCGCCcUCGCgCGUcGCCGCCGCc -3'
miRNA:   3'- cGGAG--------GCGGaGGCG-GCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 133270 0.72 0.298225
Target:  5'- -gCUCgGCCUCgGCCGcgGCCGagaaCGCg -3'
miRNA:   3'- cgGAGgCGGAGgCGGCaaCGGCg---GCG- -5'
7639 5' -63.3 NC_001973.1 + 128427 0.71 0.36134
Target:  5'- cGCCUCCcuGCCUUgGuuGgugGCCGCgUGCa -3'
miRNA:   3'- -CGGAGG--CGGAGgCggCaa-CGGCG-GCG- -5'
7639 5' -63.3 NC_001973.1 + 124496 0.67 0.578343
Target:  5'- ---cCCGCgCUCUGCCGgcgcugGCCGaCGCg -3'
miRNA:   3'- cggaGGCG-GAGGCGGCaa----CGGCgGCG- -5'
7639 5' -63.3 NC_001973.1 + 123299 0.69 0.416496
Target:  5'- gGCCagCGCa-CCG-CGUaGCCGCCGCg -3'
miRNA:   3'- -CGGagGCGgaGGCgGCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 119452 0.75 0.180389
Target:  5'- cGCCg-CGCCcgCCGCCGccGCCGCCGa -3'
miRNA:   3'- -CGGagGCGGa-GGCGGCaaCGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 115084 0.69 0.458902
Target:  5'- gGCCUCgGCgUCCGCCGagGCgcgaugucugaGCCGg -3'
miRNA:   3'- -CGGAGgCGgAGGCGGCaaCGg----------CGGCg -5'
7639 5' -63.3 NC_001973.1 + 113683 0.71 0.339309
Target:  5'- cGCCgCCGCCgCCGCC-UUcuccucgacgcGUCGCCGCu -3'
miRNA:   3'- -CGGaGGCGGaGGCGGcAA-----------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 113577 0.75 0.193622
Target:  5'- cGCUUuuGCCggUGCCGgcGCUGCCGCu -3'
miRNA:   3'- -CGGAggCGGagGCGGCaaCGGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.