miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 5' -63.3 NC_001973.1 + 158609 1.11 0.000518
Target:  5'- cGCCUCCGCCUCCGCCGUUGCCGCCGCc -3'
miRNA:   3'- -CGGAGGCGGAGGCGGCAACGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 29149 0.86 0.032064
Target:  5'- aGCCUCCGCCgCCGCC---GCCGCCGCc -3'
miRNA:   3'- -CGGAGGCGGaGGCGGcaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 158547 0.83 0.054949
Target:  5'- uCCUCCGCCUCCGCCGccaccaccGCCcgaGCCGCu -3'
miRNA:   3'- cGGAGGCGGAGGCGGCaa------CGG---CGGCG- -5'
7639 5' -63.3 NC_001973.1 + 82881 0.82 0.0624
Target:  5'- cGCCUCCGCCgcccuucuuucCCGUCGc-GCCGCCGCg -3'
miRNA:   3'- -CGGAGGCGGa----------GGCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 46458 0.82 0.0624
Target:  5'- cGCCgCCGCUUCCGCC---GCCGCCGCc -3'
miRNA:   3'- -CGGaGGCGGAGGCGGcaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 109838 0.79 0.103133
Target:  5'- aCCUgCGCUUCCGCggCGUcGCCGCCGCc -3'
miRNA:   3'- cGGAgGCGGAGGCG--GCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 24150 0.79 0.108372
Target:  5'- cGCCgcCCGCCUCggCGCUGgcGCUGCCGCu -3'
miRNA:   3'- -CGGa-GGCGGAG--GCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 77292 0.78 0.125626
Target:  5'- cGCCUCCGCCgCCGCCGagacgGgCGgCGCg -3'
miRNA:   3'- -CGGAGGCGGaGGCGGCaa---CgGCgGCG- -5'
7639 5' -63.3 NC_001973.1 + 32558 0.77 0.141913
Target:  5'- cGCCgCCGCCgacgCCGCCGUcggcucgGCgCGCUGCg -3'
miRNA:   3'- -CGGaGGCGGa---GGCGGCAa------CG-GCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 6959 0.77 0.152592
Target:  5'- gGCCUCCGgCUgcUCGCCcgaacaggGCCGCCGCg -3'
miRNA:   3'- -CGGAGGCgGA--GGCGGcaa-----CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 109495 0.76 0.160112
Target:  5'- gGCCgaacgaacgCCGCCgCCGCCGUUcGCCGCUugGCu -3'
miRNA:   3'- -CGGa--------GGCGGaGGCGGCAA-CGGCGG--CG- -5'
7639 5' -63.3 NC_001973.1 + 86968 0.76 0.176159
Target:  5'- cGCCgUCCGCC-CCGCCcgcGgcGCCGuCCGCc -3'
miRNA:   3'- -CGG-AGGCGGaGGCGG---CaaCGGC-GGCG- -5'
7639 5' -63.3 NC_001973.1 + 21274 0.76 0.176159
Target:  5'- aGCCgCgGCgUCCGCCGg-GCCGUCGCu -3'
miRNA:   3'- -CGGaGgCGgAGGCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 119452 0.75 0.180389
Target:  5'- cGCCg-CGCCcgCCGCCGccGCCGCCGa -3'
miRNA:   3'- -CGGagGCGGa-GGCGGCaaCGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 113577 0.75 0.193622
Target:  5'- cGCUUuuGCCggUGCCGgcGCUGCCGCu -3'
miRNA:   3'- -CGGAggCGGagGCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 144370 0.74 0.222648
Target:  5'- aGCCgCCGCCgCCGCC---GCCGCCGa -3'
miRNA:   3'- -CGGaGGCGGaGGCGGcaaCGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 35130 0.72 0.279173
Target:  5'- --aUCaCGCCUCCGCCGgcgacagGCC-CCGCu -3'
miRNA:   3'- cggAG-GCGGAGGCGGCaa-----CGGcGGCG- -5'
7639 5' -63.3 NC_001973.1 + 71693 0.72 0.281656
Target:  5'- uUCgCCGCCUUgaaccagcgaaccggCGCCGccGCCGCCGCg -3'
miRNA:   3'- cGGaGGCGGAG---------------GCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 83067 0.72 0.28353
Target:  5'- gGCCUCCuCCUCCuCCGgcgagcggcggcggcGCCGUCGCg -3'
miRNA:   3'- -CGGAGGcGGAGGcGGCaa-------------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 42640 0.72 0.291764
Target:  5'- aGCCUUCGCCacgaGUCGc-GCCGCCGCc -3'
miRNA:   3'- -CGGAGGCGGagg-CGGCaaCGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.