miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7639 5' -63.3 NC_001973.1 + 784 0.71 0.332185
Target:  5'- uGCCUCgCGUgaaaUCCGCCGaacgGCgGCUGCa -3'
miRNA:   3'- -CGGAG-GCGg---AGGCGGCaa--CGgCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 1220 0.71 0.36134
Target:  5'- cGCCgCCGCCgCCGCCGcccaagGCU-CCGCg -3'
miRNA:   3'- -CGGaGGCGGaGGCGGCaa----CGGcGGCG- -5'
7639 5' -63.3 NC_001973.1 + 3771 0.67 0.540488
Target:  5'- aCCgcgcgCgCGCC-CCGUCcacgGCCGCCGCg -3'
miRNA:   3'- cGGa----G-GCGGaGGCGGcaa-CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 6431 0.66 0.61674
Target:  5'- cGCCgacgagCgCGCCcgUCGCCGgaGCCGUgcuCGCg -3'
miRNA:   3'- -CGGa-----G-GCGGa-GGCGGCaaCGGCG---GCG- -5'
7639 5' -63.3 NC_001973.1 + 6959 0.77 0.152592
Target:  5'- gGCCUCCGgCUgcUCGCCcgaacaggGCCGCCGCg -3'
miRNA:   3'- -CGGAGGCgGA--GGCGGcaa-----CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 8605 0.66 0.62638
Target:  5'- aGCCggCgGCCgcgCCGCgGacgacGCCGCCGa -3'
miRNA:   3'- -CGGa-GgCGGa--GGCGgCaa---CGGCGGCg -5'
7639 5' -63.3 NC_001973.1 + 9918 0.66 0.587905
Target:  5'- cGCgUUCGugaCCUgCCGCgggaaGUUGcCCGCCGCg -3'
miRNA:   3'- -CGgAGGC---GGA-GGCGg----CAAC-GGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 14655 0.67 0.559326
Target:  5'- aGCCaccggCCGCUcgUCCGCCc--GCCGCC-Cg -3'
miRNA:   3'- -CGGa----GGCGG--AGGCGGcaaCGGCGGcG- -5'
7639 5' -63.3 NC_001973.1 + 18173 0.67 0.528358
Target:  5'- cGCCaCCGCC-CUGUucaGUUccuccagcuucaccGCCGCCGCg -3'
miRNA:   3'- -CGGaGGCGGaGGCGg--CAA--------------CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 21274 0.76 0.176159
Target:  5'- aGCCgCgGCgUCCGCCGg-GCCGUCGCu -3'
miRNA:   3'- -CGGaGgCGgAGGCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 21662 0.69 0.458902
Target:  5'- gGCCgagcacguagCCGCUuaUCCGCaCGggaugcGCCGCCGUc -3'
miRNA:   3'- -CGGa---------GGCGG--AGGCG-GCaa----CGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 23233 0.66 0.607109
Target:  5'- gGCCUggcgCUGCUgagCGCCGcgUGUCGCUGCc -3'
miRNA:   3'- -CGGA----GGCGGag-GCGGCa-ACGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 24150 0.79 0.108372
Target:  5'- cGCCgcCCGCCUCggCGCUGgcGCUGCCGCu -3'
miRNA:   3'- -CGGa-GGCGGAG--GCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 25582 0.66 0.61674
Target:  5'- cCCUCCuCCUCCucggcgcccaGCCuGUUcGCCGCCa- -3'
miRNA:   3'- cGGAGGcGGAGG----------CGG-CAA-CGGCGGcg -5'
7639 5' -63.3 NC_001973.1 + 25667 0.71 0.36134
Target:  5'- aGCCgUCGCCgaagccgUCGCCGaaGCCGUCGCc -3'
miRNA:   3'- -CGGaGGCGGa------GGCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 25715 0.69 0.416496
Target:  5'- aGCCUugcgcgCCGCCcgcgCCGCCGgcGCgGCCu- -3'
miRNA:   3'- -CGGA------GGCGGa---GGCGGCaaCGgCGGcg -5'
7639 5' -63.3 NC_001973.1 + 28423 0.69 0.424786
Target:  5'- cGCUuggCgGCCgCgGCCGccGCCGCCGCc -3'
miRNA:   3'- -CGGa--GgCGGaGgCGGCaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 29149 0.86 0.032064
Target:  5'- aGCCUCCGCCgCCGCC---GCCGCCGCc -3'
miRNA:   3'- -CGGAGGCGGaGGCGGcaaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 31347 0.67 0.559326
Target:  5'- gGCgC-CCGCgCUCUG-CGUgGUCGCCGCg -3'
miRNA:   3'- -CG-GaGGCG-GAGGCgGCAaCGGCGGCG- -5'
7639 5' -63.3 NC_001973.1 + 32558 0.77 0.141913
Target:  5'- cGCCgCCGCCgacgCCGCCGUcggcucgGCgCGCUGCg -3'
miRNA:   3'- -CGGaGGCGGa---GGCGGCAa------CG-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.