miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 3' -49.6 NC_001973.1 + 158229 1.11 0.009714
Target:  5'- aCGGCGCAUCGACAGCAUAUUCAACGAg -3'
miRNA:   3'- -GCCGCGUAGCUGUCGUAUAAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 102907 0.79 0.642772
Target:  5'- aGGCcaGCAUCGACAGCAgcgUCGucGCGAu -3'
miRNA:   3'- gCCG--CGUAGCUGUCGUauaAGU--UGCU- -5'
7640 3' -49.6 NC_001973.1 + 71490 0.77 0.747105
Target:  5'- uGGUGCcgCGcuaccGCAGCAcGUUCAACGAg -3'
miRNA:   3'- gCCGCGuaGC-----UGUCGUaUAAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 26181 0.76 0.792057
Target:  5'- gGGCGCGUCGACGGCGcuccaguuGCGGa -3'
miRNA:   3'- gCCGCGUAGCUGUCGUauaagu--UGCU- -5'
7640 3' -49.6 NC_001973.1 + 35688 0.75 0.814263
Target:  5'- gCGGCGCggUGGCGGCgAUGcgCGACGAg -3'
miRNA:   3'- -GCCGCGuaGCUGUCG-UAUaaGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 100629 0.75 0.831987
Target:  5'- gGGCaGCGUCGugGGCAgcacggUCAACGu -3'
miRNA:   3'- gCCG-CGUAGCugUCGUaua---AGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 81177 0.74 0.872719
Target:  5'- gGGCGUcggGUCGGCGGCGg---CGACGGu -3'
miRNA:   3'- gCCGCG---UAGCUGUCGUauaaGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 4634 0.73 0.879456
Target:  5'- uGGCGUacacccuGUCGGCGGCGggcgccgUCGGCGAg -3'
miRNA:   3'- gCCGCG-------UAGCUGUCGUaua----AGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 109348 0.73 0.886715
Target:  5'- cCGGCGCAgcuccgcUCGGCcguAGCGg--UCGACGAg -3'
miRNA:   3'- -GCCGCGU-------AGCUG---UCGUauaAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 58638 0.73 0.887428
Target:  5'- -cGCGCuucgacgcCGGCGGCGUGUUCAACGc -3'
miRNA:   3'- gcCGCGua------GCUGUCGUAUAAGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 96902 0.73 0.887428
Target:  5'- gGGCGCGUCGGaucguucuCGGCc-GUUCGGCGAc -3'
miRNA:   3'- gCCGCGUAGCU--------GUCGuaUAAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 137219 0.73 0.894419
Target:  5'- gCGGCGCGUCcGCAGaCAUcAUUguGCGAa -3'
miRNA:   3'- -GCCGCGUAGcUGUC-GUA-UAAguUGCU- -5'
7640 3' -49.6 NC_001973.1 + 30395 0.72 0.925595
Target:  5'- cCGGCGCGgcggCGGCGGCGgaggCGccGCGAa -3'
miRNA:   3'- -GCCGCGUa---GCUGUCGUauaaGU--UGCU- -5'
7640 3' -49.6 NC_001973.1 + 41139 0.72 0.931059
Target:  5'- uCGGCGg--CGGCGGCGg--UCAGCGGg -3'
miRNA:   3'- -GCCGCguaGCUGUCGUauaAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 96713 0.72 0.936265
Target:  5'- aGGCGUGUCGGCGcGCGUAUcgCAccguguacGCGAa -3'
miRNA:   3'- gCCGCGUAGCUGU-CGUAUAa-GU--------UGCU- -5'
7640 3' -49.6 NC_001973.1 + 39065 0.71 0.941214
Target:  5'- aCGGCGagGUCGguggGCGGCAUugcgUCAGCGGa -3'
miRNA:   3'- -GCCGCg-UAGC----UGUCGUAua--AGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 55222 0.71 0.958479
Target:  5'- aCGGCGgAggCGGCGGCGgcgggCGGCGAg -3'
miRNA:   3'- -GCCGCgUa-GCUGUCGUauaa-GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 7752 0.7 0.962181
Target:  5'- gCGGCGCGaaccgcggCGGCGGCGgcgUCGAgGAg -3'
miRNA:   3'- -GCCGCGUa-------GCUGUCGUauaAGUUgCU- -5'
7640 3' -49.6 NC_001973.1 + 54116 0.7 0.965648
Target:  5'- uGGCGC-UCGACGGUGUugagcUUGACGAu -3'
miRNA:   3'- gCCGCGuAGCUGUCGUAua---AGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 81815 0.7 0.971898
Target:  5'- cCGGCGCcgcCGGCGGCGacgAgaCGACGAg -3'
miRNA:   3'- -GCCGCGua-GCUGUCGUa--UaaGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.