miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 3' -49.6 NC_001973.1 + 1020 0.67 0.995279
Target:  5'- gCGGCGCGUCGccgaaAUAGUAU-UUguACGAc -3'
miRNA:   3'- -GCCGCGUAGC-----UGUCGUAuAAguUGCU- -5'
7640 3' -49.6 NC_001973.1 + 4634 0.73 0.879456
Target:  5'- uGGCGUacacccuGUCGGCGGCGggcgccgUCGGCGAg -3'
miRNA:   3'- gCCGCG-------UAGCUGUCGUaua----AGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 6414 0.66 0.997095
Target:  5'- aGuGCGCggCGGCGGCGcgc-CGACGAg -3'
miRNA:   3'- gC-CGCGuaGCUGUCGUauaaGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 7752 0.7 0.962181
Target:  5'- gCGGCGCGaaccgcggCGGCGGCGgcgUCGAgGAg -3'
miRNA:   3'- -GCCGCGUa-------GCUGUCGUauaAGUUgCU- -5'
7640 3' -49.6 NC_001973.1 + 8173 0.66 0.997595
Target:  5'- uCGGCGgGUCGACGGacgagcgcgcCGACGGc -3'
miRNA:   3'- -GCCGCgUAGCUGUCguauaa----GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 10584 0.68 0.987397
Target:  5'- aCGGCGCGcUCGGCaaaguauuGGCAg--UUGGCGAg -3'
miRNA:   3'- -GCCGCGU-AGCUG--------UCGUauaAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 10747 0.68 0.990288
Target:  5'- -aGCGCAUCaGCGGCGgGUgcgCGACGGg -3'
miRNA:   3'- gcCGCGUAGcUGUCGUaUAa--GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 10815 0.69 0.977285
Target:  5'- gCGGCGagaAUCGccacgaggaGCAGCGUGaUCAGCGc -3'
miRNA:   3'- -GCCGCg--UAGC---------UGUCGUAUaAGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 14342 0.66 0.997095
Target:  5'- cCGGCcgcacuugGCGUgGuCGGCGUggUCGACGGg -3'
miRNA:   3'- -GCCG--------CGUAgCuGUCGUAuaAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 17545 0.66 0.99751
Target:  5'- gCGGcCGCGUUGACcgucaacAGCGUGcaCAugGAa -3'
miRNA:   3'- -GCC-GCGUAGCUG-------UCGUAUaaGUugCU- -5'
7640 3' -49.6 NC_001973.1 + 18541 0.69 0.985723
Target:  5'- gGGCGCGcCGGCcGCAUAggcgccucaUCAugGAa -3'
miRNA:   3'- gCCGCGUaGCUGuCGUAUa--------AGUugCU- -5'
7640 3' -49.6 NC_001973.1 + 23785 0.67 0.996569
Target:  5'- aCGcGCGCAUCGucgaguACGGCcacuucUUCGGCGAc -3'
miRNA:   3'- -GC-CGCGUAGC------UGUCGuau---AAGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 25355 0.66 0.997095
Target:  5'- uGGCGCucaagcggcUCGACGGCA---UCAACc- -3'
miRNA:   3'- gCCGCGu--------AGCUGUCGUauaAGUUGcu -5'
7640 3' -49.6 NC_001973.1 + 25841 0.66 0.998581
Target:  5'- uCGGCGCA-CGGCGcGCAgcacaCGACGu -3'
miRNA:   3'- -GCCGCGUaGCUGU-CGUauaa-GUUGCu -5'
7640 3' -49.6 NC_001973.1 + 26181 0.76 0.792057
Target:  5'- gGGCGCGUCGACGGCGcuccaguuGCGGa -3'
miRNA:   3'- gCCGCGUAGCUGUCGUauaagu--UGCU- -5'
7640 3' -49.6 NC_001973.1 + 30395 0.72 0.925595
Target:  5'- cCGGCGCGgcggCGGCGGCGgaggCGccGCGAa -3'
miRNA:   3'- -GCCGCGUa---GCUGUCGUauaaGU--UGCU- -5'
7640 3' -49.6 NC_001973.1 + 31364 0.68 0.988916
Target:  5'- uGGuCGCcgCGGCGGUGUGcgcCAGCGAc -3'
miRNA:   3'- gCC-GCGuaGCUGUCGUAUaa-GUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 35688 0.75 0.814263
Target:  5'- gCGGCGCggUGGCGGCgAUGcgCGACGAg -3'
miRNA:   3'- -GCCGCGuaGCUGUCG-UAUaaGUUGCU- -5'
7640 3' -49.6 NC_001973.1 + 36576 0.66 0.99829
Target:  5'- gGGCGCGUUGACGcGCGcgcugcacuacaUGggCGACGu -3'
miRNA:   3'- gCCGCGUAGCUGU-CGU------------AUaaGUUGCu -5'
7640 3' -49.6 NC_001973.1 + 39065 0.71 0.941214
Target:  5'- aCGGCGagGUCGguggGCGGCAUugcgUCAGCGGa -3'
miRNA:   3'- -GCCGCg-UAGC----UGUCGUAua--AGUUGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.