miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 896 0.67 0.573177
Target:  5'- cAGCU-CGCG-CGCGUUCUCgaGCCG-CCg -3'
miRNA:   3'- -UCGAcGCGCuGCGCGGGAG--CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 109159 0.67 0.573177
Target:  5'- gAGCcGgGCGAgccggucgccCGCGCgCUCGCCGagcgcgCCg -3'
miRNA:   3'- -UCGaCgCGCU----------GCGCGgGAGCGGCa-----GG- -5'
7640 5' -62.8 NC_001973.1 + 120423 0.67 0.573177
Target:  5'- cAGCUGgGCGACGUGCUC-CaGCUGa-- -3'
miRNA:   3'- -UCGACgCGCUGCGCGGGaG-CGGCagg -5'
7640 5' -62.8 NC_001973.1 + 7325 0.67 0.563618
Target:  5'- --gUGCGCGGCcCGCCCguguUUGUCGUCg -3'
miRNA:   3'- ucgACGCGCUGcGCGGG----AGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 95835 0.67 0.563618
Target:  5'- gGGC-GCgGCGACGgGCCCggUGCCGg-- -3'
miRNA:   3'- -UCGaCG-CGCUGCgCGGGa-GCGGCagg -5'
7640 5' -62.8 NC_001973.1 + 45662 0.67 0.563618
Target:  5'- cGGcCUGCGCGucucggauuCGCGCgUgggCGCCGUgCa -3'
miRNA:   3'- -UC-GACGCGCu--------GCGCGgGa--GCGGCAgG- -5'
7640 5' -62.8 NC_001973.1 + 63641 0.67 0.563618
Target:  5'- cGCgugGgGCGGCGCGCCg--GCCG-CCu -3'
miRNA:   3'- uCGa--CgCGCUGCGCGGgagCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 83034 0.67 0.563618
Target:  5'- cGGCggGCgagGCGGCGCGCCCgUCGagcCCGcggCCu -3'
miRNA:   3'- -UCGa-CG---CGCUGCGCGGG-AGC---GGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 63926 0.67 0.554102
Target:  5'- gAGCUGaGCGACuGCGUgC-CGCUGaUCCa -3'
miRNA:   3'- -UCGACgCGCUG-CGCGgGaGCGGC-AGG- -5'
7640 5' -62.8 NC_001973.1 + 82453 0.67 0.554102
Target:  5'- aGGUcaUGCGCGuuauGCGCGCCgUgucCGCCGgCCc -3'
miRNA:   3'- -UCG--ACGCGC----UGCGCGGgA---GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 82869 0.67 0.554102
Target:  5'- -aCUcCGCGGCgGCGCCUcCGCCGcCCu -3'
miRNA:   3'- ucGAcGCGCUG-CGCGGGaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 123058 0.67 0.554102
Target:  5'- cGGCa-CGgGACGCGCUCUCGCCc--- -3'
miRNA:   3'- -UCGacGCgCUGCGCGGGAGCGGcagg -5'
7640 5' -62.8 NC_001973.1 + 158630 0.67 0.554102
Target:  5'- cGCcGCcCGGCGCGCCCgaCGacCCGUUCg -3'
miRNA:   3'- uCGaCGcGCUGCGCGGGa-GC--GGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 123289 0.67 0.544635
Target:  5'- gGGCagGCGCGGCcaGCGCaCCgcguaGCCG-CCg -3'
miRNA:   3'- -UCGa-CGCGCUG--CGCG-GGag---CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 96426 0.67 0.544635
Target:  5'- cGCUGCaaGAUGCcuCCCgccacCGCCGUCUu -3'
miRNA:   3'- uCGACGcgCUGCGc-GGGa----GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 45966 0.67 0.544635
Target:  5'- cGGCgGC-CGGCGCGCUCgcccUGCUGUCg -3'
miRNA:   3'- -UCGaCGcGCUGCGCGGGa---GCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 133482 0.68 0.53522
Target:  5'- cAGC-GgGCGAgCaCGCUCgCGCCGUCCa -3'
miRNA:   3'- -UCGaCgCGCU-GcGCGGGaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 138198 0.68 0.53522
Target:  5'- uGGCggacaGCaCGACGCgGCCCUCGaucggcacuaucUCGUCCu -3'
miRNA:   3'- -UCGa----CGcGCUGCG-CGGGAGC------------GGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 98337 0.68 0.534282
Target:  5'- cGCUGCagcggcgGCGGCGCGCgUUCgGCCG-CUu -3'
miRNA:   3'- uCGACG-------CGCUGCGCGgGAG-CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 58742 0.68 0.533344
Target:  5'- cAGCgGCGCGccguCGCGCCCcucguggaagagUGCCGgcgcgCCg -3'
miRNA:   3'- -UCGaCGCGCu---GCGCGGGa-----------GCGGCa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.