miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 109699 0.67 0.602055
Target:  5'- cAGUUGCGCGGacaggGCGCUCgaUCGCgUGUCg -3'
miRNA:   3'- -UCGACGCGCUg----CGCGGG--AGCG-GCAGg -5'
7640 5' -62.8 NC_001973.1 + 95311 0.67 0.602055
Target:  5'- gAGC-GCGCGcCGCGCgUUCGUCGa-- -3'
miRNA:   3'- -UCGaCGCGCuGCGCGgGAGCGGCagg -5'
7640 5' -62.8 NC_001973.1 + 7088 0.67 0.592401
Target:  5'- gAGUUGagucCGGCGCGCgCgacCGCCGUCg -3'
miRNA:   3'- -UCGACgc--GCUGCGCGgGa--GCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 33712 0.67 0.592401
Target:  5'- uGCUGuCGggcaCGAucacCGCGCaCUUGCCGUCCc -3'
miRNA:   3'- uCGAC-GC----GCU----GCGCGgGAGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 43001 0.67 0.592401
Target:  5'- uGC-GUGCGA-GCGCCgaCUCGCCGcgucgCCg -3'
miRNA:   3'- uCGaCGCGCUgCGCGG--GAGCGGCa----GG- -5'
7640 5' -62.8 NC_001973.1 + 23691 0.67 0.592401
Target:  5'- cGC-GCGuCGACGCGCCagcugcgCGCCaagCCg -3'
miRNA:   3'- uCGaCGC-GCUGCGCGGga-----GCGGca-GG- -5'
7640 5' -62.8 NC_001973.1 + 66808 0.67 0.589509
Target:  5'- uGCUGCGCG-CGCaGUucgucuugggcaagCC-CGCCGUCg -3'
miRNA:   3'- uCGACGCGCuGCG-CG--------------GGaGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 141349 0.67 0.586621
Target:  5'- aAGCUcGaCGCGaACGCGCgauuccCCUCggugcacgccaacgaGCCGUCCc -3'
miRNA:   3'- -UCGA-C-GCGC-UGCGCG------GGAG---------------CGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 96898 0.67 0.582773
Target:  5'- cGGCggGCGCGuCGgauCGUUCUCGgCCGUUCg -3'
miRNA:   3'- -UCGa-CGCGCuGC---GCGGGAGC-GGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 2885 0.67 0.582773
Target:  5'- cGGCggacGCGCGucguCGCGCUuugCUCGCCG-Cg -3'
miRNA:   3'- -UCGa---CGCGCu---GCGCGG---GAGCGGCaGg -5'
7640 5' -62.8 NC_001973.1 + 89300 0.67 0.582773
Target:  5'- cGGC--CGCGACGCGCg--CGCCGUUg -3'
miRNA:   3'- -UCGacGCGCUGCGCGggaGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 74353 0.67 0.582773
Target:  5'- cGGCgGCGCaGCgGCGCaC-CGCCGUCUg -3'
miRNA:   3'- -UCGaCGCGcUG-CGCGgGaGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 83446 0.67 0.582773
Target:  5'- cGCccgGUGCGACaGCGCCg-CGCuCGUCg -3'
miRNA:   3'- uCGa--CGCGCUG-CGCGGgaGCG-GCAGg -5'
7640 5' -62.8 NC_001973.1 + 8591 0.67 0.581812
Target:  5'- gAGCcGCGCGAgaaagccggcggcCGCGCCgCggacgaCGCCG-CCg -3'
miRNA:   3'- -UCGaCGCGCU-------------GCGCGG-Ga-----GCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 10760 0.67 0.581812
Target:  5'- cGGgUGCGCGACGgGCUCgUCGUguugcaccagcagCGUCg -3'
miRNA:   3'- -UCgACGCGCUGCgCGGG-AGCG-------------GCAGg -5'
7640 5' -62.8 NC_001973.1 + 3269 0.67 0.577011
Target:  5'- uGCUGCaaGGCgGCGCCCaugaagaucaaacggUCGCgCGUCg -3'
miRNA:   3'- uCGACGcgCUG-CGCGGG---------------AGCG-GCAGg -5'
7640 5' -62.8 NC_001973.1 + 124767 0.67 0.577011
Target:  5'- cGgUGCGCG-CGCGCUCUguucgacuaucuggcCGCCGgcgagggCCg -3'
miRNA:   3'- uCgACGCGCuGCGCGGGA---------------GCGGCa------GG- -5'
7640 5' -62.8 NC_001973.1 + 109159 0.67 0.573177
Target:  5'- gAGCcGgGCGAgccggucgccCGCGCgCUCGCCGagcgcgCCg -3'
miRNA:   3'- -UCGaCgCGCU----------GCGCGgGAGCGGCa-----GG- -5'
7640 5' -62.8 NC_001973.1 + 896 0.67 0.573177
Target:  5'- cAGCU-CGCG-CGCGUUCUCgaGCCG-CCg -3'
miRNA:   3'- -UCGAcGCGCuGCGCGGGAG--CGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 154208 0.67 0.573177
Target:  5'- gGGCUGCGacaGGCccaaGUCCUcuucCGCCGUCUc -3'
miRNA:   3'- -UCGACGCg--CUGcg--CGGGA----GCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.