miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 39424 0.66 0.631112
Target:  5'- cGGUgagGCGCGuCGCGUCCagggcgaCGCCGaugCCc -3'
miRNA:   3'- -UCGa--CGCGCuGCGCGGGa------GCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 106832 0.66 0.631112
Target:  5'- cGCuUGCGCc-CGCGCCCgCGCCcgcgCCc -3'
miRNA:   3'- uCG-ACGCGcuGCGCGGGaGCGGca--GG- -5'
7640 5' -62.8 NC_001973.1 + 34342 0.66 0.631112
Target:  5'- gAGCUcccaGCGCGAguCGgGCgCgUCGCCcUCCg -3'
miRNA:   3'- -UCGA----CGCGCU--GCgCG-GgAGCGGcAGG- -5'
7640 5' -62.8 NC_001973.1 + 96200 0.66 0.631112
Target:  5'- aAGCcgGuCGCGGUGCGCCaccagagUCGCCGcCCc -3'
miRNA:   3'- -UCGa-C-GCGCUGCGCGGg------AGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 138431 0.66 0.631112
Target:  5'- aAGUUGCGCG-CGCGCggaaaggCGCgCGUCa -3'
miRNA:   3'- -UCGACGCGCuGCGCGgga----GCG-GCAGg -5'
7640 5' -62.8 NC_001973.1 + 89108 0.66 0.625295
Target:  5'- gAGCUcCGCgGGCGCGCucuCCuccucccaaucgagcUCGCCGUCg -3'
miRNA:   3'- -UCGAcGCG-CUGCGCG---GG---------------AGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 4210 0.66 0.621417
Target:  5'- uGCaUGCGCuggaaGGCGCGCCUgccggCGCuCGUUUg -3'
miRNA:   3'- uCG-ACGCG-----CUGCGCGGGa----GCG-GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 27529 0.66 0.621417
Target:  5'- cAGUUGgGCGGCuuguaGCaGUCCUC-CCGUCUg -3'
miRNA:   3'- -UCGACgCGCUG-----CG-CGGGAGcGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 97925 0.66 0.621417
Target:  5'- ---gGCGUu-CGCGCuCCUCGUCGUCg -3'
miRNA:   3'- ucgaCGCGcuGCGCG-GGAGCGGCAGg -5'
7640 5' -62.8 NC_001973.1 + 47978 0.66 0.621417
Target:  5'- aGGCUcgGCGCGcCGCGCUCUCa--GUUCg -3'
miRNA:   3'- -UCGA--CGCGCuGCGCGGGAGcggCAGG- -5'
7640 5' -62.8 NC_001973.1 + 70088 0.66 0.621417
Target:  5'- gGGCucgauguugUGCGCGAgCGCGaacgCCUCGgCGcCCg -3'
miRNA:   3'- -UCG---------ACGCGCU-GCGCg---GGAGCgGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 42784 0.66 0.621417
Target:  5'- cAGCaaGCGCG-CGCGCCaaC-CCGUCUa -3'
miRNA:   3'- -UCGa-CGCGCuGCGCGGgaGcGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 115666 0.66 0.615603
Target:  5'- cGGCUGgGcCGACGagcaGCuggagaagauaaucgCCUCgcuGCCGUCCa -3'
miRNA:   3'- -UCGACgC-GCUGCg---CG---------------GGAG---CGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 28260 0.66 0.611729
Target:  5'- cAGCgUGCGCaacuCGCGaUCUCGCCGcgCCu -3'
miRNA:   3'- -UCG-ACGCGcu--GCGCgGGAGCGGCa-GG- -5'
7640 5' -62.8 NC_001973.1 + 71757 0.66 0.611729
Target:  5'- cGGCcGCGC--CGgGCCC-CGCCG-CCg -3'
miRNA:   3'- -UCGaCGCGcuGCgCGGGaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 23152 0.66 0.611729
Target:  5'- uGCcGCGCGGCGCucaaacGCCUcuUCGCgCG-CCa -3'
miRNA:   3'- uCGaCGCGCUGCG------CGGG--AGCG-GCaGG- -5'
7640 5' -62.8 NC_001973.1 + 24140 0.66 0.611729
Target:  5'- cGGgUGCGCG-CGcCGCCCgccucggCGCUGgcgcugCCg -3'
miRNA:   3'- -UCgACGCGCuGC-GCGGGa------GCGGCa-----GG- -5'
7640 5' -62.8 NC_001973.1 + 36153 0.66 0.611729
Target:  5'- gGGCaGCGCGcugguCGCGUUCUUGCaCGaCCa -3'
miRNA:   3'- -UCGaCGCGCu----GCGCGGGAGCG-GCaGG- -5'
7640 5' -62.8 NC_001973.1 + 36330 0.66 0.611729
Target:  5'- cGCgGC-CGACGCgGgCCUCGgCGUUCa -3'
miRNA:   3'- uCGaCGcGCUGCG-CgGGAGCgGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 109699 0.67 0.602055
Target:  5'- cAGUUGCGCGGacaggGCGCUCgaUCGCgUGUCg -3'
miRNA:   3'- -UCGACGCGCUg----CGCGGG--AGCG-GCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.