miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7640 5' -62.8 NC_001973.1 + 119159 0.72 0.313442
Target:  5'- aAGCUGgGCaaguccaucGACGCGCCCgucgaGCCGacgCCg -3'
miRNA:   3'- -UCGACgCG---------CUGCGCGGGag---CGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 32397 0.72 0.313442
Target:  5'- gGGCUGCuccaCGGCGacaGCCCggcgaacacgUUGCCGUCCu -3'
miRNA:   3'- -UCGACGc---GCUGCg--CGGG----------AGCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 74576 0.72 0.327277
Target:  5'- cGCgGCgGCGGCGuCGUCCUCGuCCG-CCa -3'
miRNA:   3'- uCGaCG-CGCUGC-GCGGGAGC-GGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 70149 0.72 0.327277
Target:  5'- cGCaGCGCGucCGCGUCCgcgGCCGUCUc -3'
miRNA:   3'- uCGaCGCGCu-GCGCGGGag-CGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 118007 0.71 0.332936
Target:  5'- gGGCUGCGUGuucgagaGCGCGUacguguaCCgggCGCCGUUCg -3'
miRNA:   3'- -UCGACGCGC-------UGCGCG-------GGa--GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 139912 0.71 0.341559
Target:  5'- uGCUGCGCGccauGCGCGCCauguCUCGCuucgagcacaaCGUCUu -3'
miRNA:   3'- uCGACGCGC----UGCGCGG----GAGCG-----------GCAGG- -5'
7640 5' -62.8 NC_001973.1 + 77267 0.71 0.356286
Target:  5'- uGGCccUGCGCGACGacgacgacgcCGCCUcCGCCG-CCg -3'
miRNA:   3'- -UCG--ACGCGCUGC----------GCGGGaGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 111003 0.71 0.356286
Target:  5'- aAGCUGCGCGACGUgagcaucgcguGCCUgcucaCGCCG-Ca -3'
miRNA:   3'- -UCGACGCGCUGCG-----------CGGGa----GCGGCaGg -5'
7640 5' -62.8 NC_001973.1 + 69924 0.71 0.363815
Target:  5'- aGGCcGcCGCGGCGCGugagcaggcCCCUgccgcgcaUGCCGUCCa -3'
miRNA:   3'- -UCGaC-GCGCUGCGC---------GGGA--------GCGGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 136586 0.71 0.363815
Target:  5'- cGCgccgGCGCGACGCucagcucgucggGCgCCUCGgCGUCg -3'
miRNA:   3'- uCGa---CGCGCUGCG------------CG-GGAGCgGCAGg -5'
7640 5' -62.8 NC_001973.1 + 33135 0.71 0.3792
Target:  5'- cGCUGCGU--CGCGCCCUgcaggugcuUGUgGUCCa -3'
miRNA:   3'- uCGACGCGcuGCGCGGGA---------GCGgCAGG- -5'
7640 5' -62.8 NC_001973.1 + 103938 0.71 0.3792
Target:  5'- cGCgGCGCGggGCGUGCCgUCGCgGcgCCa -3'
miRNA:   3'- uCGaCGCGC--UGCGCGGgAGCGgCa-GG- -5'
7640 5' -62.8 NC_001973.1 + 5940 0.7 0.387055
Target:  5'- cGCacgaUGCGCGACGCGgCCggcggaugCGaCGUCCu -3'
miRNA:   3'- uCG----ACGCGCUGCGCgGGa-------GCgGCAGG- -5'
7640 5' -62.8 NC_001973.1 + 7268 0.7 0.387055
Target:  5'- gGGCUcggcGCGCGGCGCGCCCgcuaCCGggUCa -3'
miRNA:   3'- -UCGA----CGCGCUGCGCGGGagc-GGCa-GG- -5'
7640 5' -62.8 NC_001973.1 + 49748 0.7 0.394215
Target:  5'- uGCUGUGCGugGCGCgcgacggcaCCaccuuccacggcaUCGCCGgCCa -3'
miRNA:   3'- uCGACGCGCugCGCG---------GG-------------AGCGGCaGG- -5'
7640 5' -62.8 NC_001973.1 + 77367 0.7 0.395016
Target:  5'- cGCgGC-CG-CGCGCCCgcgCGCCGgcgCCg -3'
miRNA:   3'- uCGaCGcGCuGCGCGGGa--GCGGCa--GG- -5'
7640 5' -62.8 NC_001973.1 + 107258 0.7 0.402271
Target:  5'- cGC-GCGCGGCGCGUcgcuugaCCUCGuUCGUCa -3'
miRNA:   3'- uCGaCGCGCUGCGCG-------GGAGC-GGCAGg -5'
7640 5' -62.8 NC_001973.1 + 86781 0.7 0.402271
Target:  5'- cGGCUGCggcaaauacggaaGCGACGCaaacGCCCUgGCCG-Cg -3'
miRNA:   3'- -UCGACG-------------CGCUGCG----CGGGAgCGGCaGg -5'
7640 5' -62.8 NC_001973.1 + 98253 0.7 0.403082
Target:  5'- cGCUGCGCGGCGCuggucGCgUUCGC--UCCg -3'
miRNA:   3'- uCGACGCGCUGCG-----CGgGAGCGgcAGG- -5'
7640 5' -62.8 NC_001973.1 + 17822 0.7 0.403082
Target:  5'- cGUUGaGCGACGCGCCgUCGaggguggcgugcCCGUCg -3'
miRNA:   3'- uCGACgCGCUGCGCGGgAGC------------GGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.